Publications

Only select publications, beginning January 2009, are available online. Please contact ICBR if you are searching for a specific citation. Please note that the publications listed are the result of data generated by one or more ICBR cores.
YearSelect PublicationsAssociated Cores
2019

Collins J, O'Grady K, Chen S, Gurley W. 2019. The C-terminal WD40 repeats on the TOPLESS co-repressor function as a protein-protein interaction surface. Plant Mol Biol doi: 10.1007/s11103-019-00842-w.

Proteomics & Mass Spectrometry
2019

Rodrigues TA, Tuna KM, Alli AA, Tribulo P, Hansen PJ, Koh J, Paula-Lopes FF. 2019. Follicular fluid exosomes act on the bovine oocyte to improve oocyte competence to support development and survival to heat shock. Reprod Fertil Dev doi: 10.1071/RD18450.

Proteomics & Mass Spectrometry
2019

Meng L, Zhang T, Geng S, Scott PB, Li H, Chen S. 2019. Comparative proteomics and metabolomics of JAZ7-mediated drought tolerance in Arabidopsis. J Proteomics 196:81-91.

Proteomics & Mass Spectrometry
2019

Zhang T, Schneider JD, Lin C, Geng S, Ma T, Lawrence SR, Dufresne CP, Harmon AC, Chen S. 2019. MPK4 Phosphorylation Dynamics and Interacting Proteins in Plant Immunity. J Proteome Res. 18(3):826-840.

Proteomics & Mass Spectrometry
2018

Duan L, Zhao H, Xiong Y, Tang X, Yang Y, Hu Z, Li C, Chen S, Yu X. 2018. miR-16-2* Interferes with WNT5A to Regulate Osteogenesis of Mesenchymal Stem Cells. Cell Physiol Biochem. 51(3):1087-1102.

Proteomics & Mass Spectrometry
2018

Misra BB, Reichman SM, Chen S. 2018. The guard cell ionome: Understanding the role of ions in guard cell functions. Prog Biophys Mol Biol. pii: S0079-6107(18)30173-1.

Proteomics & Mass Spectrometry
2018

Collins J, Dufresne C, Gurley WB, Chen S. 2018. Proteomics dataset containing proteins that obscure identification of TOPLESS interactors in Arabidopsis. Data Brief. 20:909-916.

Proteomics & Mass Spectrometry
2018

Boatwright JL, McIntyre LM, Morse AM, Chen S, Yoo MJ, Koh J, Soltis PS, Soltis DE, Barbazuk WB. 2018. A Robust Methodology for Assessing Differential Homeolog Contributions to the Transcriptomes of Allopolyploids. Genetics 210(3):883-894.

Proteomics & Mass Spectrometry
2018

Lawrence S 2nd, Pang Q, Kong W, Chen S. 2018. Stomata Tape-Peel: An Improved Method for Guard Cell Sample Preparation. J Vis Exp 15;137.

Proteomics & Mass Spectrometry
2018

Yu J, Zhang Y, Liu J, Wang L, Liu P, Yin Z, Guo S, Ma J, Lu Z, Wang T, She Y, Miao Y, Ma L, Chen S, Li Y, Dai S. 2018. Proteomic discovery of H2O2 response in roots and functional characterization of PutGLP gene from alkaligrass. Planta 248(5):1079-1099.

Proteomics & Mass Spectrometry
2018

Zhao Q, Chen W, Bian J, Xie H, Li Y, Xu C, Ma J, Guo S, Chen J, Cai X, Wang X, Wang Q, She Y, Chen S, Zhou Z, Dai S. 2018. Proteomics and Phosphoproteomics of Heat Stress-Responsive Mechanisms in Spinach. Front Plant Sci 26;9:800.

Proteomics & Mass Spectrometry
2018

Pang Q, Zhang T, Wang Y, Kong W, Guan Q, Yan X, Chen S. 2018. Metabolomics of Early Stage Plant Cell-Microbe Interaction Using Stable Isotope Labeling. Front Plant Sci 5;9:760.

Proteomics & Mass Spectrometry
2018

Ma T, Yoo MJ, Zhang T, Liu L, Koh J, Song WY, Harmon AC, Sha W, Chen S. 2018. Characterization of thiol-based redox modifications of Brassica napusSNF1-related protein kinase 2.6-2C. FEBS Open Bio 8(4):628-645.

Proteomics & Mass Spectrometry
2018

Xiong Y, Xu L, Yu X, Yang Y, Zhao D, Hu Z, Li C, Zhao H, Duan L, Zhang B, Chen S, Liu T. 2018. Comparison of 6-year Follow-up Result of Hybrid Surgery and Anterior Cervical Discectomy and Fusion for the Treatment of Contiguous Two-segment Cervical Degenerative Disc Diseases. Spine (Phila Pa 1976). 43(20):1418-1425.

Proteomics & Mass Spectrometry
2018

Fountain JC, Koh J, Yang L, Pandey MK, Nayak SN, Bajaj P, Zhuang WJ, Chen ZY, Kemerait RC, Lee RD, Chen S, Varshney RK, Guo B. 2018. Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capability. Sci Rep 8(1):3430.

Proteomics & Mass Spectrometry
2018

Zhou J, Liu D, Wang P, Ma X, Lin W, Chen S, Mishev K, Lu D, Kumar R, Vanhoutte I, Meng X, He P, Russinova E, Shan L. 2018. Regulation of Arabidopsis brassinosteroid receptor BRI1 endocytosis and degradation by plant U-box PUB12/PUB13-mediated ubiquitination. Proc Natl Acad Sci U S A. 115(8):E1906-E1915.

Proteomics & Mass Spectrometry
2018

Yang L, Fountain JC, Ji P, Ni X, Chen S, Lee RD, Kemerait RC, Guo B. 2018. Deciphering drought-induced metabolic responses and regulation in developing maize kernels. Plant Biotechnol J doi: 10.1111/pbi.12899.

Proteomics & Mass Spectrometry
2018

Zhou X, Teper D, Andrade MO, Zhang T, Chen S, Song WY, Wang N. 2018. A Phosphorylation Switch on Lon Protease Regulates Bacterial Type III Secretion System in Host. MBio 9(1)pii:e02146-17.

Proteomics & Mass Spectrometry
2018

Zhang T, Meng L, Kong W, Yin Z, Wang Y, Schneider JD, Chen S. 2018. Quantitative proteomics reveals a role of JAZ7 in plant defense response to Pseudomonas syringae DC3000. J Proteomics 175:114-126.

Proteomics & Mass Spectrometry
2018

Klee SM, Mostafa I, Chen S, Dufresne C, Lehman BL, Sinn JP, Peter KA, McNellis TW. 2018. An Erwinia amylovora yjeK mutant exhibits reduced virulence, increased chemical sensitivity and numerous environmentally dependent proteomic alterations. Mol Plant Pathol. 19(7):1667-1678.

Proteomics & Mass Spectrometry
2018

McMillan LJ, Hwang S, Farah RE, Koh J, Chen S, Maupin-Furlow JA. 2018. Multiplex quantitative SILAC for analysis of archaeal proteomes: a case study of oxidative stress responses. Environ Microbiol 20(1):385-401.

Proteomics & Mass Spectrometry
2017

Yu J, Jin X, Sun X, Gao T, Chen X, She Y, Jiang T, Chen S, Dai S. 2017. Hydrogen Peroxide Response in Leaves of Poplar (Populus simonii × Populus nigra) Revealed from Physiological and Proteomic Analyses. Int J Mol Sci 18(10) pii: E2085.

Proteomics & Mass Spectrometry
2017

Geng S, Yu B, Zhu N, Dufresne C, Chen S. 2017. Metabolomics and Proteomics of Brassica napus Guard Cells in Response to Low CO2. Front Mol Biosci 25;4:51.

Proteomics & Mass Spectrometry
2017

Zhu M, Zhang T, Ji W, Silva-Sanchez C, Song WY, Assmann SM, Harmon AC, Chen S. 2017. Redox regulation of a guard cell SNF1-related protein kinase in Brassica napus, an oilseed crop. Biochem J 474(15):2585-2599.

Proteomics & Mass Spectrometry
2017

Wei S, Bian Y, Zhao Q, Chen S, Mao J, Song C, Cheng K, Xiao Z, Zhang C, Ma W, Zou H, Ye M, Dai S. 2017. Salinity-Induced Palmella Formation Mechanism in Halotolerant Algae Dunaliella salina Revealed by Quantitative Proteomics and Phosphoproteomics. Front Plant Sci. doi: 10.3389/fpls.2017.00810.

Proteomics & Mass Spectrometry
2017

Suo J, Zhao Q, David L, Chen S, Dai S. 2017. Salinity Response in Chloroplasts: Insights from Gene Characterization. Int J Mol Sci 18(5) pii: E1011.

Proteomics & Mass Spectrometry
2017

Mostafa I, Yoo MJ, Zhu N, Geng S, Dufresne C, Abou-Hashem M, El-Domiaty M, Chen S. 2017. Membrane Proteomics of Arabidopsis Glucosinolate Mutants cyp79B2/B3 and myb28/29. Front Plant Sci doi: 10.3389/fpls.2017.00534.

Proteomics & Mass Spectrometry
2017

Ahn SJ, Gu T, Koh J, Rice KC. 2017. Remodeling of the Streptococcus mutans proteome in response to LrgAB and external stresses. Sci Rep 7(1):14063.

Proteomics & Mass Spectrometry
2017

Ma C, Wang Y, Gu D, Nan J, Chen S, Li H. 2017. Overexpression of S-Adenosyl-l-Methionine Synthetase 2 from Sugar Beet M14 Increased Arabidopsis Tolerance to Salt and Oxidative Stress. Int J Mol Sci18(4). pii: E847. doi: 10.3390/ijms18040847.

Proteomics & Mass Spectrometry
2017

Cowie AM, Sarty KI, Mercer A, Koh J, Kidd KA, Martyniuk CJ. 2017. Molecular networks related to the immune system and mitochondria are targets for the pesticide dieldrin in the zebrafish (Danio rerio) central nervous system. J Proteomics 157:71-82

Proteomics & Mass Spectrometry
2017

Zhang T, Schneider JD, Zhu N, Chen S. 2017. Identification of MAPK Substrates Using Quantitative Phosphoproteomics. Methods Mol Biol 1578:133-142.

Proteomics & Mass Spectrometry
2017

Cowie AM, Sarty KI, Mercer A, Koh J, Kidd KA, Martyniuk CJ. 2017. The pesticide dieldrin disrupts proteins related to oxidative respiration and mitochondrial stress in the central nervous system. Data Brief 11:628-633.

Proteomics & Mass Spectrometry
2017

Yin Z, Balmant K, Geng S, Zhu N, Zhang T, Dufresne C, Dai S, Chen S. 2017. Bicarbonate Induced Redox Proteome Changes in Arabidopsis Suspension Cells. Front Plant Sci 8:58. doi: 10.3389/fpls.2017.00058.

Proteomics & Mass Spectrometry
2017

Park YJ, Koh J, Kwon JT, Park YS, Yang L, Cha S. 2017. Uncovering stem cell differentiation factors for salivary gland regeneration by quantitative analysis of differential proteomes. PLoS One 12(2):e0169677.

Proteomics & Mass Spectrometry
2011Muthukrishnan, G., Quinn, G., Lamers, R., Diaz, C., Cole, A., Chen, S., & Cole, A. (2011). Exoproteome of Staphylococcus aureus Reveals Putative Determinants of Nasal Carriage. J. Proteome Res., 10(4), 2064-2078.Proteomics & Mass Spectrometry
2014Moroz, L. L., Kocot, K. M., Citarella, M. R., Dosung, S., Norekian, T. P., Povolotskaya, I. S., Fahong, Y, & Kohn, A. B. (2014). The ctenophore genome and the evolutionary origins of neural systems. Nature.
2012Moreb, J., Ucar, D., Han, S., Amory, J., Goldstein, A., Ostmark, B., & Chang, L. (2012). The enzymatic activity of human aldehyde dehydrogenases 1A2 and 2 (ALDH1A2 and ALDH2) is detected by Aldefluor, inhibited by diethylaminobenzaldehyde and has significant effects on cell proliferation and drug resistance. Chem Biol Interact, 195(1), 52-60.
2010Mohandas, R., & Segal, M. (2010). Endothelial progenitor cells and endothelial vesicles – what is the significance for patients with chronic kidney disease? Blood Purif, 29(2), 158-162.
2010Martyniuk, C., Feswick, A., Spade, D., Kroll, K., Barber, D., & Denslow, N. (2010). Effects of acute dieldrin exposure on neurotransmitters and global gene transcription in largemouth bass (Micropterus salmoides) hypothalamus. Neurotoxicology, 31(4), 356-366.
2011Mai, V., Young, C., Ukhanova, M., Wang, X., Sun, Y., Shuster, J., Theriaque, D., Li, N., Sharma, R., Hudak, M., & Neu, J. (2011). Fecal microbiota in premature infants prior to necrotizing enterocolitis. PLoS ONE, 6, e20647.
2015Lu, S., Zeumer, L., Sorensen, H., Yang, H., Ng, Y., Yu, F., ... & Morel, L. (2015). The Murine Pbx1-d Lupus Susceptibility Allele Accelerates Mesenchymal Stem Cell Differentiation and Impairs Their Immunosuppressive Function. The Journal of Immunology, 194(1), 43-55.Bioinformatics
2013Lovett D., Shekhar N, Nickerson J., Roux K., & Lele T. (2013). Modulation of Nuclear Shape by Substrate Rigidity. Cell Mol Bioeng, 6(2), 230-238.
2013Li-Wen Chang, Ann Fu, Edward Wozniak, Marjorie Chow, Diane G. Duke, Linda Green, Karen Kelley, Jorge A. Hernandes, Elliot R. Jacobson. (2013) Immunohistochemical Detection of a Unique Protein within Cells of Snakes Having Inclusion Body Disease, a World-Wide Disease Seen in Members of the Families Boidae and Pythonidae. PLoS ONE 8(12): e82916. (Press release Vet School, featured ICBR web)Electron Microscopy
2012Li Y., Yao J., Garden B., Chang K., Yu F., & Goodenow, M. (2012). HPV-QUEST: a highly customized system for automated HPV sequence analysis capable of processing Next Generation Sequencing data set. Bioinformation, 8(8), 388-90.Bioinformatics
2009Li, Y., Lee, P., Sobel, E., Narain, S., Satoh, M., Segal, M., Reeves, W., & Richards, H. (2009). Increased expression of FcgammaRI/CD64 on circulating monocytes parallels ongoing inflammation and nephritis in lupus. Arthritis Research & Therapy, 11(1), R6.
2010Li, Y., Lee, P., Kellner, E., Paulus, M., Switanek, J., Xu, Y., Zhuang, H., Sobel, E., Segal, M., Satoh, M., & Reeves, W. (2010). Monocyte surface expression of Fcgamma receptor RI (CD64), a biomarker reflecting type-I interferon levels in systemic lupus erythematosus. Arthritis Research & Therapy, 12(3), R90.Bioinformatics
2009Li, X., Hu, Z., Jorgenson, M., & Slayton, W. (2009). High levels of acetylated low-density lipoprotein uptake and low tyrosine kinase with immunoglobulin and epidermal growth factor homology domains-2 (Tie2) promoter activity distinguish sinusoids from other vessel types in murine bone marrow. Circulation, 120(19), 1910-1918.
2012Li S., & Yu F. (2012). Cranial morphometric study of four giant flying squirrels (Petaurista) (Rodentia: Sciuridae) from China. Zoological Research, 33, 119-126.Bioinformatics
2013Li S., Yu F.H. 2013. Differentiation in cranial variables among six species of Hylopetes (Sciurinae: Pteromyini). Zoological Research, 34: E120-E127.Bioinformatics
2013Li S., He K., Yu F.H., Yang Q.S. 2013. Molecular Phylogeny and Biogeography of Petaurist Inferred from the Cytochrome b Gene, with Implications for the Taxonomic Status of P. caniceps, P. marica and P. sybilla. Plos One 8:e70461.Bioinformatics
2009Levings, P., McGarry, S., Currie, T., Nickerson, D., McClellan, S., Ghivizzani, S., Steindler, A., & Gibbs, C. (2009). Expression of an exogenous human Oct-4 promoter identifies tumor-initiating cells in osteosarcoma. Cancer Research, 69(14), 5648-5655.
2014Leonard, M. T., Davis-Richardson, A. G., Ardissone, A. N., Kemppainen, K. M., Drew, J. C., Ilonen, J., ... & Triplett, E. W. (2014). The methylome of the gut microbiome: disparate Dam methylation patterns in intestinal Bacteroides dorei. Frontiers in microbiology, 5.
2013Leonard, M.T., Panayotova, N., Farmerie, W.G., Triplett, E.W., Nicholson, W.L. (2013). Complete Genome Sequence of Carnobacterium gilichinskyi Strain WN1359T (DSM 27470T). Genome Announc, 1(6), e00985-13, doi: 10.1128/genomeA.00985-13.Bioinformatics
2014Leem, G., Morseth, Z. A., Puodziukynaite, E., Jiang, J., Fang, Z., Gilligan, A. T., ... & Schanze, K. S. (2014). Light-Harvesting and Charge Separation in a π-Conjugated Antenna Polymer Bound to TiO2. The Journal of Physical Chemistry C. Electron Microscopy
2013Lee, K., Park, J., Williams, D., Xiong, Y., Hwang, I., Kang, B. (2013). Defective chloroplast development inhibits maintenance of normal levels of abscisic acid in a mutant of the Arabidopsis RH3 DEAD-box protein during early post-germination growth. Plant Journal, 73(5), pgs, 720-732. .Electron Microscopy
2013Lednicky, J. A., Waltzek, T. B., McGeehan, E., Loeb, J. C., Hamilton, S. B., & Luetke, M. C. (2013). Isolation and genetic characterization of human coronavirus NL63 in primary human renal proximal tubular epithelial cells obtained from a commercial supplier, and confirmation of its replication in two different types of human primary kidney cells. Virology Journal, 10, 213. doi:10.1186/1743-422X-10-213Electron Microscopy
2013Law, L., Corsino, P., Jahn, S., Davis, B., Chen, S., Patel, B., Pham, K., Lu, J., Sheppard, B., Nørgaard, P., Hong, J., Luesch, H., & Law, B. (2013). Glucocorticoids and histone deacetylase inhibitors cooperate to block the invasiveness of basal-like breast cancer cells through novel mechanisms. Oncogene, 32(10), 1316-29.Proteomics & Mass Spectrometry
2013Laurence Prunetti, Christopher J. Reuter, Nathaniel L. Hepowit, Yifei Wu, Luisa Barrueto, Hugo V. Miranda, Karen Kelley, Julie A. Maupin-Furlow. (2013) Structural and biochemical properties of an extreme ‘salt-loving’ proteasome activating nucleotidase from archaeon Haloferax volcanii. Extremophiles, 18(2), pp 283-293. Electron Microscopy
2012Koh, J., Chen, S., Zhu, N., Yu, F., Soltis, P., & Soltis, D. (2012). Comparative proteomics of the recently and recurrently formed natural allopolyploid Tragopogon mirus (Asteraceae) and its parents. New Phytologist, 196, 292-305.Proteomics & Mass Spectrometry, Bioinformatics
2011Koh, E., Zhou, L., Williams, D., Park, J., Ding, N., Duan, Y., & Kang, B. (2011). Callose deposition in the phloem plasmodesmata and inhibition of phloem transport in citrus leaves infected with “Candidatus Liberibacter asiaticus”. Protoplasma, 249(3), 687-697.Electron Microscopy
2011Knoll, J., Ramos, M., Zeng, Y., Holbrook, C., Chow, M., Chen, S., Maleki, S., Bhattacharya, A., & Ozias-Akins, P. (2011). TILLING for allergen reduction and improvement of quality traits in peanut (Arachis hypogaea L.). BMC Plant Biology, 11, 81.Proteomics & Mass Spectrometry
2010Kang, S., Chen, S., & Dai, S. (2010) Proteomics characteristics of rice leaves in response to environmental factors. Frontiers in Biology, 5, 246-254.Proteomics & Mass Spectrometry
2011Kang, B., Nielsen, E., Preuss, M., Mastronarde, D., & Staehelin, L. (2011). Electron Tomography of RabA4b- and PI-4Kbeta1-Labeled Trans Golgi Network Compartments in Arabidopsis. Traffic, 12, 313-329.Electron Microscopy
2011Kang, B. (2011). Shrinkage and fragmentation of the trans-Golgi network in non-meristematic plant cells. Plant Signaling & Behavior, 6, 884-886.Electron Microscopy
2010Jungke, P., Ostrow, G., Li, J., Norton, S., Nieber, K., Kelber, O., & Butterweck, V. (2011). Profiling of hypothalamic and hippocampal gene expression in chronically stressed rats treated with St. John’s wort extract (STW 3-VI) and fluoxetine. Psychopharmacology, 213(4), 757-772.Gene Expression & Genotyping
2012Jubair, M., Morris, J., & Ali, A. (2012). Survival of Vibrio cholera in Nutrient-Poor Environments Is Associated with Novel “Persister” Phenotype. PLoS ONE, 7(9), e45187. doi:10.1371.Electron Microscopy
2009Jeyaprakash, A., & Hoy, M. (2009). The nuclear genome of the phytoseiid Metaseiulus occidentalis (Acari: Phytoseiidae) is among the smallest known in arthropods. Experimental and Applied Acarology, 47(4), 263-273.Cytometry
2009Jaiswal, A., Aneja, R., Connors, S., Joshi, H., Multani, A., Pathak, S., & Narayan, S. (2009). 9-bromonoscapine-induced mitotic arrest of cigarette smoke condensate-transformed breast epithelial cells. Journal of Cellular Biochemistry, 106(6), 1146-1156.
2012Jadhao C., Bhatwadekar A., Jiang Y., Boulton M., Steinle J., & Grant M. (2012). Nerve growth factor promotes endothelial progenitor cell-mediated angiogenic responses. Invest Ophthalmol Vis Sci, 53(4), 2030-7.
2010Humbard, M., Miranda, H., Lim, J., Krause, D., Pritz, J., Zhou, G., Chen, S., Wells, L., & Maupin-Furlow, J. (2010). Ubiquitin-like Small Archaeal Modifier Proteins (SAMPs) and their conjugation to proteins in Haloferax volcanii. Nature, 463, 54-60.Proteomics & Mass Spectrometry
2013Hu, G., Koh, J., Yoo, M., Grupp, K., Chen, S., & Wendel, J. (2013). Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadense. New Phytologist, doi: 10.1111/nph.12381.Proteomics & Mass Spectrometry
2014Hu G, Koh J, Yoo MJ, Pathak D, Chen S, Wendel JF. 2014 Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.). Planta. DOI: 10.1007/s00425-014-2146-7Bioinformatics, Proteomics & Mass Spectrometry
2012Hoy M., Yu F., Meyer J., Tarazona O., Jeyaprakash A., & Wu K. (2012). Transcriptome sequencing and annotation of the predatory mite Metaseiulus occidentalis (Acari: Phytoseiidae): a cautionary tale about possible contamination by prey sequences. Experimental and Applied Acarology, 59(3), 283-296.NextGen DNA Sequnecing, Bioinformatics
2013Hill T., Ashrafi H., Reyes-Chin-Wo S., Yao J., Stoffel K., Truco M., Kozik L., & Michelmore R. (2013). Characterization of Capsicum annuum genetic diversity and population structure based on parallel polymorphism discovery with a 30K unigene pepper GeneChip. PLoS ONE, 8(2), e56200. Bioinformatics
2012Hepowit, N., Uthandi, S., Miranda, H., Toniutti, M., Olivarez, O., De Vera, S.., Fanucci, G., Chen, S., & Maupin-Furlow, J. (2012). Archaeal JAB1/MPN/MOV34 metalloenzyme (HvJAMM1) cleaves ubiquitin-like small archaeal modifier proteins (SAMPs) from protein-conjugates. Molecular Microbiology, 86, 971-987.Proteomics & Mass Spectrometry
2012He, Y., Dai, S., Dufresne, C., Zhu, N., Pang, Q., & Chen, S. (2012). Integrated proteomics and metabolomics of Arabidopsis acclimation to gene-dosage dependent perturbation of isopropylmalate dehydrogenases. PLoS ONE, 8(3): e57118. doi:10.1371/journal.pone.0057118.Proteomics & Mass Spectrometry
2011He, Y., Chen, L., Zhou, Y., Mawhinney, T., Chen, B., Kang, B., Hauser, B., & Chen, S. (2011). Functional characterization of Arabidopsis thaliana isopropylmalate dehydrogenases reveals their important roles in gametophyte development. New Phytol, 189, 160-175.Electron Microscopy
2009Havre, P., Abe, M., Urasaki, Y., Ohnuma, K., Morimoto, C., & Dang, N. (2009). CD26 expression on T cell lines increases SDF-1-alpha-mediated invasion. British Journal of Cancer, 101(6), 983-991.
2009Harris J., Fisher, R., Jorgensen, M., Kaushal, S., & Scott, E. (2009). CD133 progenitor cells from the bone marrow contribute to retinal pigment epithelium repair. Stem Cells, 27(2), 457-466.Cytometry
2010Hansen, P., Block, J., Loureiro, B., Bonilla, L., & Hendricks, K. (2010). Effects of gamete source and culture conditions on the competence of in vitro-produced embryos for post-transfer survival in cattle. Reproduction, Fertility and Development, 22(1), 59-66.
2013Gray, J., Dittrich, A., Chen, S., Avila, J., Giavalisco, P., & Devarenne, T. (2013). Two Pdk1 phosphorylation sites on the plant cell death suppressor Adi3 contribute to substrate phosphorylation. BBA - Proteins and Proteomics, 1834, 1099-1106.Proteomics & Mass Spectrometry
2010Goodison, S., Sun, Y., & Urquidi, V. (2010). Review: Derivation of cancer diagnostic and prognostic signatures from gene expression data. Bioanalysis, 2, 855-862.
2013Goncalves, E., Johnson, J., & Rathinasabapthi, B. (2013). Conversion of membrane lipid acyl groups to triacylglycerol and formation of lipid bodies upon nitrogen starvation in biofuel green algae Chlorella UTEX29. Planta, doi:10.1007/s00425-013-1946-5.Electron Microscopy
2010Garcia-Reyero, N., Lavelle, C., Escalon, B., Martinović, D., Kroll, K., Sorensen, P., & Denslow, N. (2010). Behavioral and genomic impacts of a wastewater effluent on the fathead minnow. Aquatic Toxicology, 101(1), 38-48.
2014Gao, C., Cai, Y., Wang, Y., Kang, B. H., Aniento, F., Robinson, D. G., & Jiang, L. (2014). Retention mechanisms for ER and Golgi membrane proteins. Trends in plant science, 19(8), 508-515.Electron Microscopy
2014Dyka, F. M., Boye, S. L., Chiodo, V. A., Hauswirth, W. W., & Boye, S. E. (2014). Dual adeno-associated virus vectors result in efficient in vitro and in vivo expression of an oversized gene, MYO7A. Human gene therapy methods, 25(2), 166-177.Sanger Sequencing
2013Donohoe, B., Kang, B., Gerl, M., Gergely, Z., McMichael, C., Bednarek, S., Staehelin, L. (2013). Cis-Golgi Cisternal Assembly and Biosynthetic Activation Occur Sequentially in Plants and Algae. TRAFFIC, 14(5), 551-567.
2014Denison, Fiona C., Tufan Gökirmak, and Robert J. Ferl. "Phosphorylation-related modification at the dimer interface of 14-3-3ω dramatically alters monomer interaction dynamics." Archives of biochemistry and biophysics 541 (2014): 1-12.Sanger Sequencing
2013DeFraia, C., Wang, Y., Yao, J., & Mou, Z. (2013). Elongator subunit 3 positively regulates plant immunity through its histone acetyltransferase and radical S-adenosylmethionine domains. BMC Plant Biology, 13:102 doi:10.1186/1471-2229-13-102.Bioinformatics
2010Darst, R. , Pardo, C., Ai, L., Brown, K., & Kladde, M. (2010). Bisulfite Sequencing of DNA. In Current Protocols in Molecular Biology (91:7.9.1–7.9.17). John Wiley & Sons, Inc.Sanger Sequencing
2012Dai, S., & Chen, S. (2012). Single-cell-type proteomics toward a holistic understanding of plant functions. Molecular and Cellular Proteomics, 11(12), 1622-30.Proteomics & Mass Spectrometry
2011Dai, S., & Chen, S. (2011). Information processing at the proteomics level. In Kasabov, N. (Eds.), Springer Handbook of Bio-/Neuro-Informatics (Ch. 4). New York, NY: SpringerProteomics & Mass Spectrometry
2014Christiansen H.E., Mehinto A.C., Yu F.H., Perry R.W., Denslow N.D., Maule A.G., Mesa M.G. 2014. Correlation of gene expression and contaminant concentrations in wild largescale suckers: A field-based study. Science of The Total Environment. 484: 379-389.Bioinformatics
2010Chourey, P., Li, Q., & Kumar, D. (2010). Sugar-hormone cross-talk in seed development: Two redundant pathways of IAA biosynthesis are regulated differentially in the invertase-deficient miniature1 (mns1) seed mutant in maize. Molecular Plant, 3, 1026-1036.
2011Choi, K., & Harfe, B. (2011) Hedgehog signaling is required for formation of the notochord sheath and patterning of nuclei pulposi within the intervertebral discs. Proceedings of the National Academy of Sciences of the United States of America, 108, 9484-9489.Electron Microcopy
2011Cho, E., Yuen, C., Kang, B., Ondzighi, C., Staehelin, L., & Christopher, D. (2011). Protein disulfide isomerase-2 of Arabidopsis mediates protein folding and localizes to both the secretory pathway and nucleus, where it interacts with maternal effect embryo arrest factor. Molecules and Cells, 32, 459-475.
2011Chen, Y., Pang, Q., Dai, S., Wang, Y., Chen, S., & Yan, X. (2011). Proteomic identification of differentially expressed proteins in Arabidopsis in response to methyl jasmonate. Journal of Plant Physiology, 168, 995-1008.Proteomics & Mass Spectrometry
2012Chen, S. (2012). Proteomic characterization of stomatal movement. Plant Science J., 30, 12.Proteomics & Mass Spectrometry
2013Chang, L.W., Fu, A, Wozniak, E., Chow, M., Duke, D.G., Green, L., Kelley, K., Hernandez, J.A., Jacobson, E.R. (2013, Dec). Immunohistochemical detection of a unique protein within cells of snakes having inclusion body disease, a world-wide disease seen in members of the families Boidae and Pythonidae, Plos One, 8(12), article e82916.Monoclonal Antibody
2014Chakraborty, P. K., Zhang, Y., Coomes, A. S., Kim, W. J., Stupay, R., Lynch, L. D., ... & Daaka, Y. (2014). G Protein–Coupled Receptor Kinase GRK5 Phosphorylates Moesin and Regulates Metastasis in Prostate Cancer. Cancer research, 74(13), 3489-3500.Gene Expression & Genotyping, Proteomics & Mass Spectrometry
2009Carpentino, J., Hynes, M., Appelman, H., Zheng, T., Steindler, D., Scott, E., & Huang, E. (2009). Aldehyde dehydrogenase-expressing colon stem cells contribute to tumorigenesis in the transition from colitis to cancer. Cancer Researchearch, 69(20), 8208-8215.
2009Cao, M., Cabrera, R., Xu, Y., Liu, C., & Nelson, D. (2009). Gamma irradiation alters the phenotype and function of CD4+CD25+ regulatory T cells. Cell Biology International, 33(5), 565-571.
2011Cai, Y., & Sun, Y. (2011). ESPRIT-Tree: taxonomy independent analysis of millions of pyrosequences in quasilinear computational time. Nucleic Acids Research, 39, e95.
2013Cabrera R., Ararat M., Xu Y., Brusko T., Wasserfall C., Atkinson M., Chang L., Liu C., & Nelson D. (2013). Immune modulation of effector CD4+ and regulatory T cell function by sorafenib in patients with hepatocellular carcinoma. Cancer Immunol Immunother, 62(4), 737-46.
2010Cabrera, R., Ararat, M., Cao, M., Xu, Y., Wasserfall, C., Atkinson, M., Liu, C., & Nelson, D. (2010). Hepatocellular carcinoma immunopathogenesis: clinical evidence for global T cell defects and an immunomodulatory role for soluble CD25 (sCD25). Digestive Diseases and Sciences, 55(2), 484-495.
2013Brockmeier, E. K., Yu, F., Amador, D. M., Bargar, T. A., & Denslow, N. D. (2013). Custom microarray construction and analysis for determining potential biomarkers of subchronic androgen exposure in the Eastern Mosquitofish (Gambusia holbrooki). BMC genomics, 14(1), 660.NextGen DNA Sequencing
2011Brown, D., Farmerie, W., May, M., Benders, G., Durkin, A., Hlavinka, K., Hostetler, J., Jackson, J., Johnson, J., Miller, R., Paralanov, V., Radune, D., Szczypinski, B., & Glass, J. (2011). Genome sequences of Mycoplasma alligatoris A21JP2T and Mycoplasma crocodyli MP145T. Journal of Bacteriology, 193(11), 2892-2893.Bioinformatics
2014Brant, J. O., Riva, A., Resnick, J. L., & Yang, T. P. (2014). Influence of the Prader-Willi syndrome imprinting center on the DNA methylation landscape in the mouse brain. Epigenetics, 9(11), 1540-1556.Bioinformatics
2013Boucias, D., Kariithi, H., Bourtzis, K., Schneider, D., Kelley, K., Miller, W., Parker, A., & Adb-Alla, A. (2013). Transgenerational Transmission of the Glossina pallidipes Hytrosavirus Depends on the Presence of a Functional Symbiome. PLoS ONE, 8(4), e61150.Electron Microcospy
2013Boucias, D., Cai, Y., Sun, Y., Lietze, V.U., Sen, R., Raychoudhury, R., and Sharf, M.E. (2013). The hindgut lumen prokaryotic microbiota of the termite Reticulitermes flavipes and its responses to dietary lignocellulose composition. Molecular Ecology, 22, 1836-1853.
2014Bocsanczy, A. M., Achenbach, U. C., Mangravita-Novo, A., Chow, M., & Norman, D. J. (2014). Proteomic comparison of Ralstonia solanacearum strains reveals temperature dependent virulence factors. BMC genomics, 15(1), 280.Proteomics & Mass Spectrometry
2010Bhatwadekar, A., Guerin, E., Jarajapu, Y., Caballero, S., Sheridan, C., Kent, D., Kennedy, L., Lansang, M., Ruscetti, F., Pepine, C., Higgins, P., Bartelmez, S., & Grant, M. (2010). Transient inhibition of transforming growth factor-beta1 in human diabetic CD34+ cells enhances vascular reparative functions. Diabetes, 59(8), 2010-2019.
2009Bergeron, R.J.,Bharti, N., Singh, S., McManis, J.S., Wiegand, J. & Green, L.G. (2009). Vibriobactin Antibodies: A Vaccine Strategy. J. Med. Chem, 52, 3801–3813.Monoclonal Antibodies
2011Benskin, J., & Chen, S. (2011). Proteomics in the classroom: an investigative study of proteins in microorganisms. The American Biology Teacher, 74(4), 237-243.Proteomics & Mass Spectrometry
2009Beem, J., Lee, P., & Segal, M. (2009) Lambda chops: creation of site-directed mutants in insertable fragments utilizing Gateway technology. Molecular Biotechnology, 42(3), 275-281.
2010Bae, K., Su, Z., Frye, C., McClellan, S., Allan, R., Andrejewski, J., Kelley, V., Jorgensen, M., Steindler, D., Vieweg, J., & Siemann, D. (2010). Expression of pluripotent stem cell reprogramming factors by prostate tumor initiating cells. Journal of Urology, 183(5), 2045-2053.Cytometry
2014Badylak, S., Phlips, E. J., Mathews, A. L., & Kelley, K. (2014). Akashiwo sanguinea (Dinophyceae) extruding mucous from pores on the cell surface. Algae, 29(3), 197-201.Electron Microscopy
2012Azari H., Sharififar S., Fortin J., & Reynolds B. (2012). The neuroblast assay: an assay for the generation and enrichment of neuronal progenitor cells from differentiating neural stem cell progeny using flow cytometry. J Vis Exp.Cytometry
2009Aydemir, T., Liuzzi, J., McClellan, S., & Cousins, R. (2009). Zinc transporter ZIP8 (SLC39A8) and zinc influence IFN-gamma expression in activated human T cells. Journal of Leukocyte Biology, 86(2), 337-348.Cytometry
2012Ashrafi H., Hill T., Stoffel K., Kozik A., Yao J., Chin-Wo S., & Van Deynze A. (2012). De novo assembly of the pepper transcriptome (Capsicum annuum): a benchmark for in silico discovery of SNPs, SSRs and candidate genes. BMC Genomics, 13, 571.Bioinformatics
2010Anderson C., Kubisiak, T., Nelson, C., Smith, J., & Davis, J. (2010). Genome size variation in the pine fusiform rust pathogen Cronartium quercuum f.sp. fusiforme as determined by flow cytometry. Mycologia, 102(6), 1295-1302.Cytometry
2013Amador, David Moraga, et al. "Library Construction for Genome-wide Bisulfite Sequencing in Plants." (2013).NextGen DNA Sequencing
2014Al-Khedery, B., Barbet, A.F. (2014). Comparative Genomics Identifies a Potential Marker of Human-Virulent Anaplasma phagocytophilum. Pathogens, 3(1):25-35.NextGen DNA Sequencing
2012Agrawal, G., Sarkar, A., Agrawal, R., Ndimba, B., Tanou, G., Dunn, M., Kieselbach, T., Cramer, R., Wienkoop, S., Chen, S., Rafudeen, M., Deswal, R., Barkla, B., Weckwerth, W., Heazlewood, J., Renaut, J., Job, D., & Rakwal, R. (2012). Boosting the globalization of plant proteomics through INPPO: current developments and future prospects. Proteomics, 12(3), 359-368.Proteomics & Mass Spectrometry
2015 Gredler, M.L., Seifert, A.W., Cohn, M.J. Morphogenesis and patterning of the phallus and cloaca in the American alligator, alligator mississippiensis. Sex Dev. 9(1):53-67. Electron Microscopy
2015 Hill, M.R., MacKrell, E.J., Forsthoefel, C.P., Jensen, S.P., Chen, M., Moore, G.A., He, Z.L., Sumerlin, B.S. (2015) Biodegradable and pH-responsive nanoparticles designed for site-specific delivery in agriculture. Biomacromolecules. 16(4):1276-82. Electron Microscopy
2015 Fan, Y., Ortiz-Urquiza, A., Garrett, T., Pei, Y., Keyhani, N.O. (2015) Involvement of a caleosin in lipid storage, spore dispersal, and virulence in the entomopathogenic filamentous fungus, Beauveria bassiana. Environ Microbiol, 17(11):4600-14. Electron Microscopy
2015 Moussatche, N., Condit, R.C.(2015). Fine structure of the vaccinia virion determined by controlled degradation and immunolocalization. Virology, 475:204-18. Electron Microscopy
2015 Gredler, M.L., Seifert, A.W., Cohn, M.J.(2015). Tissue-specific roles of Fgfr2 in development of the external genitalia. Development. 142(12):2203-12.Electron Microscopy
2015 Gredler, M.L., Seifert, A.W., Cohn, M.J.(2015). Structure of an enteric pathogen, bovine parvovirus. Development, 142(12):2203-12.Electron Microscopy
2015 Kailasan, S., Halder, S., Gurda, B., Bladek, H., Chipman, P.R., McKenna, R., Brown, K., Agbandje-McKenna, M.(2015). Structure of an enteric pathogen, bovine parvovirus. J. Virol, 89(5):2603-14.Electron Microscopy
2015 Abhinav P. Acharya , Matthew R. Carstens , Jamal S. Lewis, Natalia Dolgova, C. Q. Xia, Michael J. Clare-Salzler, Benjamin G. Keselowsky (2015). A cell-based microarray to investigate combinatorial effects of microparticle-encapsulated adjuvants on dendritic cell activation. Immunological Biomaterials, 10.1039.Electron Microscopy
2015 Lewis, A.M., Matzdorf, S.S., Endres, J.L., Windham, I.H., Bayles, K.W., Rice, K.C. (2015). Examination of the Staphylococcus aureus nitric oxide reductase (saNOR) reveals its contribution to modulating intracellular NO levels and cellular respiration. Mol Microbiol 96(3):651-69.Electron Microscopy
2015 Hinkley, G.K., Carpinone, P., Munson, J.W., Powers, K.W., Roberts, S.M.(2015). Oral absorption of PEG-coated versus uncoated gold nanospheres: does agglomeration matter? Part Fibre Toxicol, 25;12:9. Electron Microscopy
2015 Tseng, Y.S., Gurda, B.L., Chipman, P., McKenna, R., Afione, S., Chiorini, J.A., Muzyczka, N., Olson, N.H., Baker, T.S., Kleinschmidt, J., Agbandje-McKenna, M.(2015). Adeno-associated virus serotype 1 (AAV1)- and AAV5-antibody complex structures reveal evolutionary commonalities in parvovirus antigenic reactivity. J. Virol, 89(3):1794-808.Electron Microscopy
2015Suzuki, M., Sato, Y., Wu, S., Kang, B.H., McCarty, D.R.(2015). Conserved Functions of the MATE Transporter BIG EMBRYO1 in Regulation of Lateral Organ Size and Initiation Rate. Plant Cell, 27(8):2288-300.Electron Microscopy
2015Gabetta, Matteo, Ivan Limongelli, Ettore Rizzo, Alberto Riva, Daniele Segagni, and Riccardo Bellazzi. "BigQ: a NoSQL based framework to handle genomic variants in i2b2.” BMC Bioinformatics 16, 415 (2015): s12859.Bioinformatics
2015McFarland, Karen N., Jilin Liu, Ivette Landrian, Ronald Godiska, Savita Shanker, Fahong Yu, William G. Farmerie, and Tetsuo Ashizawa. "SMRT Sequencing of long tandem nucleotide repeats in SCA10 reveals unique insight of repeat expansion structure." PloS one 10, no. 8 (2015): e0135906.Bioinformatics
2010Zhu, M., Simons, B., Ning, Z., Oppenheimer, D., & Chen, S. (2010). Analysis of abscisic acid responsive proteins in Brassica napus guard cells by multiplexed isobaric tagging. Journal of Proteomics, 73, 790-805.Proteomics & Mass Spectrometry
2011Zhu, M., Dai, S., & Chen, S. (2011). The stomata frontline of plant interaction with the environment-perspectives from hormone regulation. Frontiers in Biology, 7(2), 96-112.Proteomics & Mass Spectrometry
2013Zhang X., Yao J., Zhang Y., Sun Y., & Mou Z. (2013). The Arabidopsis Mediator complex subunits MED14/SWP and MED16/SFR6/IEN1 differentially regulate defense gene expression in plant immune responses. Plant Journal, 75(3), 484-97. Gene Expression & Genotyping
2012Zhang, X., Wang, C., Zhang, Y., Sun, Y., & Mou, Z. (2012). The Arabidopsis mediator complex subunit16 positively regulates salicylate-mediated systemic acquired resistance and jasmonate/ethylene-induced defense pathways. Plant Cell, 24(10), 4294-309.Gene Expression & Genotyping
2011Zhang, S., Flores-Cruz, Z., Zhou, L., Kang, B., Fleites, L., Gooch, M., Wulff, N., Davis, M., Duan, Y., & Gabriel, D. (2011). ‘Ca. Liberibacter asiaticus’ carries an excision plasmid prophage and a chromosomally integrated prophage that becomes lytic in plant infections. Molecular Plant-Microbe Interactions, 24, 458-468.Sanger Sequencing
2012Zhang, H., Han, B., Wang, T., Chen, S., Li, H., Zhang, Y., & Dai, S. (2012) Mechanisms of plant salt response: insights from proteomics. Journal of Proteome Research, 11, 49-67. Proteomics & Mass Spectrometry
2014Zhalnina, K. V., Dias, R., Leonard, M. T., de Quadros, P. D., Camargo, F. A., Drew, J. C., Farmerie, W, Daroub, S, & Triplett, E. W. (2014). Genome Sequence of Candidatus Nitrososphaera evergladensis from Group I. 1b Enriched from Everglades Soil Reveals Novel Genomic Features of the Ammonia-Oxidizing Archaea. PloS one, 9(7), e101648.Bioinformatics
2011Yuan, Q., Zhang, Y., Chen, Y., Wang, R., Du, C., Yasun, E., & Tan, W. (2011). Using silver nanowire antennas to enhance the conversion efficiency of photoresponsive DNA nanomotors. Proceedings of the National Academy of Sciences of the United States of America, 108, 9331-9336.Electron Microscopy
2011Yu, J., Chen, S., Zhao, Q., Wang, T., Yang, C., Diaz, C., Sun, G., & Dai, S. (2011). Physiological and proteomic analysis of salinity tolerance in Puccinellia tenuiflora. Journal of Proteome Research, 10, 3852-3870.Proteomics & Mass Spectrometry
2010Yu, F., Liu, Y., Cui, Y., Chan, E., Xie, M., McGuire, P., & Yu, F. (2010). Effect of a flavonoid extract from Cynomorium songaricum on the swimming endurance of rats. The American Journal of Chinese Medicines, 38, 65-73.Bioinformatics
2012Yu, F., Li, S., Kilpatrick, C., McGuire, P., He, K., & Wei W. (2012). Biogeographical study of plateau pika Ochotona curzoniae (Lagomorpha, Ochotona). Zoological Sciences, 29(8), 518-526.Bioinformatics
2012You, J., Lee, E., Bonilla, L., Francis, J., Koh, J., Block, J., Chen, S., & Hansen, P. (2012) Treatment with the proteasome inhibitor MG132 during the end of oocyte maturation improves oocyte competence for development after fertilization in cattle. Plos One, 7(11): e48613. doi:10.1371.Proteomics & Mass Spectrometry
2012Yin L., Liu L., Sun Y., Hou W., Lowe A., Gardner B., Salemi M., Williams W., Farmerie W., Sleasman J., & Goodenow M. (2012). High-resolution deep sequencing reveals biodiversity, population structure, and persistence of HIV-1 quasispecies within host ecosystems. Retrovirology, 9, 108.Bioinformatics
2011Yao, J., & Yu, F. (2011). DEB: A web interface for RNA-seq digital gene expression analysis. Bioinformation, 7(1), 44-45.Bioinformatics
2013Xu, G., Stevens, S., Moore, B., McClung, S., Borchelt, D. (2013). Cytosolic proteins lose solubility as amyloid deposits in a transgenic mouse model of Alzheimer-amyloidosis. Human Molecular Genetics, 22(14), 2765-74. Proteomics & Mass Spectrometry
2011Xiong, Y., Li, Q., Kang, B., & Chourey, P. (2011). Discovery of Genes Expressed in Basal Endosperm Transfer Cells in Maize Using 454 Transcriptome Sequencing. Plant Molecular Biology Reporter, 29, 835-847.Electron Microscopy
2014Xiong, Y., Mei, W., Kim, E. D., Mukherjee, K., Hassanein, H., Barbazuk, W. B., ... & Kang, B. H. (2014). Adaptive expansion of the maize maternally expressed gene (Meg) family involves changes in expression patterns and protein secondary structures of its members. BMC plant biology, 14(1), 1-14.Electron Microscopy
2014Xiao Han, Tae Kyung Hyun, Minhua Zhang, Ritesh Kumar, Eun-ji Koh, Byung-Ho Kang, William J Lucas, Jae-Yean Kim. (2014) Auxin-callose-mediated plasmodesmal gating is essential for tropic auxin gradient formation and signaling Developmental Cell 28 (2), 132-146Electron Microscopy
2010Xiang, Z., Proneth, B., Dirain, M., Litherland, S., & Haskell-Luevano, C. (2010). Pharmacological characterization of 30 human melanocortin-4 receptor polymorphisms with the endogenous proopiomelanocortin-derived agonists, synthetic agonists, and the endogenous agouti-related protein antagonist. Biochemistry, 49(22), 4583-4600.
2011Wurm, Y., Wang, J., Riba-Grognuz, O., Corona, M., Nygaard, S., Hunt, B., Ingram, K., Falquet, L., Nipitwattanaphon, M., Gotzekk, D., Dijkstra, M., Oettler, J., Comtesse, F., Shih, C., Wu, W., Yang, C., Thomas, J., Beaudoing, E., Pradervand, S., Flegel, V., Cook, E., Fabbretti, R., Stockinger, H., Long, L., Farmerie, W., Oakey, J., Boomsma, J., Pamilo, P., Yi, S., Heinze, J., Goodisman, M., Farinelli, L., Harshman, K., Hulo, N., Cerutti, L., Xenarios, I., Shoemaker, D., & Keller, L. (2011). The genome of the fire ant Solenopsis invicta. Proceedings Of The National Academy Of Sciences Of The United States Of America, 108(14), 5679-5684.Bioinformatics
2014Wu, G.A. et al. (2014). Sequencing of diverse mandarin, pummelo and orange genomes reveals complex history of admixture during citrus domestication. Nature Biotechnology, doi:10.1038/nbt.2906Bioinformatics
2009Wilson, K., Proneth, B., Luesch, H., Litherland, S., & Haskell-Luevano, C. (2009). Construction and characterization of melanocortin-2 and -4 receptor chimeras. Advances in Experimental Medicine and Biology, 611, 301-302.
2010Wellehan, J., Yu, F., Venn-Watson, S., Jensen, E., Smith, C., Farmerie, W., & Nollens, H. (2010). Characterization of San Migue sea lion virus populations using pyrosequencing based methods. Infection, Genetics and Evolution, 10, 254-260.Bioinformatics
2009Wellehan, J.F., Green, L.G., Duke, D.G., Bootorabi, S., Heard, D.J., Klein, P.A., & Jacobson, E.R. (2009). Detection of specific antibody responses to vaccination in variable flying foxes (Pteropus hypomelanus).Comp Immunol Microbiol Infect Dis., 32, 379-394.Monoclonal Antibodies
2013Wang, Y., An, C., DeFraia, C., Yao, J., Zhang, X., Zhang, Y., Sun, Y., Yu, F., Amador, A., & Mou Z. (2013). The Arabidopsis elongator complex subunit2 epigenetically regulates plant immune responses. Plant Cell, 25(2), 762-776. Gene Expression & Genotyping
2010Wang, X., Chen, S., Zhang, H., Shi, L., Cao, F., Guo, L., Xie, Y., Wang, T., Yan, X., & Dai, S. (2010). Desiccation tolerance mechanism in resurrection fern-ally Selaginella tamariscina revealed by physiological and proteomic analysis. Journal of Proteome Research, 9, 6561-6577.Proteomics & Mass Spectrometry
2009Wang, Q., Gao, F., Wang, T., Flagg, T., & Deng, X. (2009). A nonhomologous end-joining pathway is required for protein phosphatase 2A promotion of DNA double-strand break repair. Neoplasia, 11(10), 1012-1021.
2009Wang, B., Han, S., Lien, L., & Chang, L. (2009). Lentiviral calnexin-modified dendritic cells promote expansion of high-avidity effector T cells with central memory phenotype. Immunology, 128(1), 43-57.Cytometry
2009Wanchoo, A., Lewis, M., & Keyhani, N. (2009). Lectin mapping reveals stage-specific display of surface carbohydrates in in vitro and haemolymph-derived cells of the entomopathogenic fungus Beauveria bassiana. Microbiology, 155(9), 3121-3133.Cytometry
2009Walton, N., Snyder, G., Park, D., Kobeissy, F., Scheffler, B., & Steindler, D. (2009). Gliotypic neural stem cells transiently adopt tumorigenic properties during normal differentiation. Stem Cells, 27(2), 280-289.
2010Wallet, M., Rodriguez, C., Yin, L., Saporta, S., Chinratanapisit, S., Hou, W., Sleasman, J., & Goodenow, M. (2010). Microbial translocation induces persistent macrophage activation unrelated to HIV-1 levels or T-cell activation following therapy. AIDS, 24(9), 1281-1290.
2012Valles, S., Oi, D., Yu, F., Tan, X., & Buss, E. (2012). Application of metagenomics and pyrosequencing to facilitate discovery of potential viral natural enemies of the invasive Caribbean crazy ant, Nylanderia pubens (Forel). PLoS ONE, 7, e31828.
2013Valladares, R., Bojilova, L., Potts, A., Cameron, E., Gardner, C., Lorca, G., & Gonzalez, C. (2013). Lactobacillus johnsonii inhibits indoleamine 2,3-dioxygenase and alters tryptophan metabolite levels in BioBreeding rats. FASEB Journal, 27, 1711-1720.Proteomics & Mass Spectrometry
2012Ucar, D., Kurenova, E., Garrett, T., Cance, W., Nyberg, C., Cox, A., Massoll, N., Ostrov, D., Lawrence, N., Sebti, S., Zajac-Kaye, M., & Hochwald, S. (2012). Disruption of the protein interaction between FAK and IGF-1R inhibits melanoma tumor growth. Cell Cycle, 11(17), 3250-9.
2009Ucar, D., Cogle, C., Zucali, J., Ostmark, B., Scott, E., Zori, R., Gray, B., & Moreb, J. (2009). Aldehyde dehydrogenase activity as a functional marker for lung cancer. Chemico-Biological Interactions, 178(1-3), 48-55.Cytometry
2013Torrazza, R.M., Li, N., Young, C., Kobeissy, F., Chow, M., Chen, S., Mai, V., Sharma, R., Hudak, M., Shuster, J., Neu, J. (2013). Pilot study using proteomics to identify predictive biomarkers of necrotizing enterocolitis from buccal swabs in very low birth weight infants. Neonatology, 140(3), 234-242.Proteomics & Mass Spectrometry
2010Sun, Y., Urquidi, V., & Goodison S. (2010). Derivation of molecular signatures for breast cancer recurrence prediction using a two-way validation approach. Breast Cancer Researchearch and Treatment, 119, 593-599.Bioinformatics
2010Sun, Y., Todorovic, S., & Goodison, S. (2010). Local learning based feature selection for high dimensional data analysis. IEEE Transactions on Pattern Analysis and Machine Intelligence, 32, 1610-1626.Bioinformatics
2010Sun, Y., Cai, Y., Mai, V., Farmerie, W., Yu, F., Li, J., & Goodison, S. (2010). Advanced computational algorithms for microbial community analysis using mass 16S rRNA sequence data. Nucleic Acid Research, 38, e205.Bioinformatics
2011Sun, Y., Cai, Y., Huse, S., Farmerie, W., Knight, R., Wang, X., & Mai, V. (2011). A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis. Briefings in Bioinformatics, 13(1), 107-121.Bioinformatics
2014Stenglein, M. D., Jacobson, E. R., Wozniak, E. J., Wellehan, J. F., Kincaid, A., Gordon, M., ... & DeRisi, J. L. (2014). Ball Python Nidovirus: a Candidate Etiologic Agent for Severe Respiratory Disease in Python regius. MBio, 5(5), e01484-14.Electron Microscopy
2013Sriwanayos, P., Francis-Floyd, R., Stidworthy, M., Petty, B., Kelley, K., & Waltzek, T. (2013). Megalocytivirus infection in orbiculate batfish Platax orbicularis. Diseases of Aquatic Organisms, 105, 1-8. Electron Microscopy
2010Spade, D., Griffitt, R., Liu, L., Brown-Peterson, N., Kroll, K., Feswick, A., Glazer, R., Barber, D., & Denslow N. (2012). Queen conch (Strombus gigas) testis regresses during the reproductive season at nearshore sites in the Florida Keys. PLoS One, 5(9), e12737.Gene Expression & Genotyping
2009Skinner, R., Trujillo, A., Ma, X., & Beierle, E. (2009). Ketone bodies inhibit the viability of human neuroblastoma cells. Journal of Pediatric Surgery, 44(1), 212-216.
2009Simpson, A., Maeda, S., & Marsella, R. (2009). Temporal dynamic changes of phenotypic expression of peripheral CD4 cells during environmental allergen challenge in an experimental model of canine atopic dermatitis: A pilot study. Journal of Veterinary Medical Science, 71(9), 1177-1181.
2013Silva-Sanchez, C., Chen, S., Zhu, N., Li, Q., Chourey, P. (2013). Proteomic comparison of basal endosperm in Maize miniature1 mutant and its wild-type Mn1. Frontiers in Plant Physiology, 4, 210.Proteomics & Mass Spectrometry
2014Silva-Sanchez, C., Chen, S., Li, J., & Chourey, P. S. (2014). A comparative glycoproteome study of developing endosperm in the hexose-deficient miniature1 (mn1) seed mutant and its wild type Mn1 in maize. Frontiers in plant science, 5.Proteomics & Mass Spectrometry
2009Shupe, T., Piscaglia, A., Oh, S., Gasbarrini, A., & Petersen, B. (2009). Isolation and characterization of hepatic stem cells, or “oval cells,” from rat livers. Methods in Molecular Biology, 482, 387-405.
2012Shenoy, A., Fisher, R., Butterworth, E., Pi, L., Chang, L,. Appelman, H., Chang, M., Scott, E., & Huang, E. (2012). Transition from colitis to cancer: high Wnt activity sustains the tumor-initiating potential of colon cancer stem cell precursors. Cancer Res, 72(19), 5091-100. Cytometry
2012Shenoy, A., Butterworth, E., & Huang, E. (2012). ALDH as a marker for enriching tumorigenic human colonic stem cells. Methods Mol Biol, 916, 373-85. Cytometry
2013Sefah, K., Yang, Z., Bradley, K.M., Hoshika, S., Jiménez, E., Zhang, L., Zhu, G., Shanker, S., Yu, F., Turek, D., Tan, W., Benner, S.A. (Dec., 30 2013). In vitro selection with artificial expanded genetic information systems. Proc. Natl. Acad. Sci. USA, 10.1073/pnas.010123497 NextGen DNA Sequencing
2010Sefah, K., Shangguan, D., Xiong, X., O’Donoghue, M., & Tan, W. (2010). Development of DNA aptamers using Cell-SELEX. Nat Protoc, 5(6), 1169-1185.
2010Schmidt, L., Hewlett, T., Green, A., Simmons, L., Kelley, K., Doroh, M., & Stetina, S. (2010). Molecular and morphological characterization and biological control capabilities of a Pasteuria ssp: Parasitizing Rotylenchulus reniformis, the Reniform Nematode. Journal of Nematology 42(3), 207-217.Sanger Sequencing
2012Satoh, M., Chan, J., Ross, S., Li, Y., Yamasaki, Y., Yamada, H., Vazquez-del, M., Petri, M., Jara, L., Saavedra, M., Cruz-Reyes, C., Sobel, E., Reeves, W., Ceribelli, A., & Chan, E. (2012). Autoantibodies to transcription intermediary factor (TIF)1β associated with dermatomyositis. Arthritis Research & Therapy, 14(2), R79.Proteomics & Mass Spectrometry
2009Sandhu, S., James, V., Quesenberry, K., & Altpeter, F. (2009). Risk assessment of transgenicapomictic tetraploid bahiagrass, cytogenetics, breeding behavior and performance of intra-specific hybrids. Theoretical and Applied Genetics, 119(8), 1383-1395.Cytometry
2010Sandhu, S., Blount, A., Quesenberry, K., & Altpeter, F. (2010). Apomixis and ploidy barrier suppress pollen-mediated gene flow in field grown transgenic turf and forage grass (Paspalum notatum Flüggé). Theoretical and Applied Genetics, 121(5), 919-929.Cytometry
2011Saldana, Z., Sanchez, E., Cortes, J., Peunte, J., & Giron, J. (2011). Surface structures involved in plant stomata and leaf colonization by Shiga-toxigenic Escherichia coli O157:H7. Frontiers in Microbiology, 2, 119.Electron Microscopy
2013Sakatani, M., Bonilla, L., Dobbs, K., Block, J., Ozawa, M., Shanker, S., Yao, J., & Hansen, P. (2013). Changes in the transcriptome of morula-stage bovine embryos caused by heat shock: relationship to developmental acquisition of thermotolerance. Reproductive Biology and Endocrinology, doi: 10.1186/1477-7827-11-3.Bioinformatics
2009Ruiz, C., Nollens, H., Venn-Watson, S., Green, L., Wells, R., Walsh, M., Nolan, E., McBain, J., & Jacobson, E. (2009). Baseline circulating immunoglobulin G levels in managed collection and free-ranging bottlenose dolphins (Tursiops truncates). Developmental and Comparative Immunology, 33, 449–455. Monoclonal Antibodies
2012Rice, L., Lepler, S., Pampo, C., & Siemann, D. (2012). Impact of the SRC inhibitor dasatinib on the metastatic phenotype of human prostate cancer cells. Clin Exp Metastasis, 2, 133-42.
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2013Nirmala, X., Schetelig, M., Yu, F., Handler, A. (2013). An EST database of the Caribbean fruit fly, Anastrepha suspense (Diptera: Tephritidae). Gene, 517, 212-217.Bioinformatics
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