Bioinformatics
Acknowledge Core
Proper Citation:
University of Florida ICBR Bioinformatics Core Facility, RRID:SCR_019120
Contact
ICBR-Bioinformatics@ad.ufl.edu
(352) 273-8049
I received my B.S. on Biomedicine Engineering from Huazhong University of Science and Technology and Ph.D. on Bioinformatics from Institute of Biophysics Chinese Academy of Sciences in China. I did my Postdoc training in The Jackson Laboratory, where I developed pipelines and GWAS methods for studying the function and regulation of RNA editing in mouse populations. In addition, I made contribution to the field for the single point variants discovery from deep sequencing data and was invited to give talks at multiple professional conferences, such as Genome Informatics meeting at CSHL, 2nd generation sequencing meeting from GTC, and RNA Sciences in Cell and Developmental Biology II meeting from RIKEN CDB in Japan.
After my postdoc training, I worked at The University of Chicago on identifying key players in cancer development. Particularly, I played a leading role in the data analysis for two large projects (Chicago pancreatic cancer initiative and The Cancer Genome Atlas) and gained valuable experiences of handling samples of >2000 from getting the tumor tissue from patients to validating the data analysis results using PDX models and other experimental approaches.
In 2016, I moved to UF ICBR, where I perform consultation, experimental design and data analysis for researchers within UF and outside UF. I extended the scope of biological field beyond mouse and human, such as plants and bacteria. I also extended my data analysis skills beyond traditional machine learning and statistics, such as deep learning.
Name | Telephone | Room | Department | |
---|---|---|---|---|
UF | ICBR Administration | Administration | |||
Name/Title/Department | Phone | Location | Administration | |
Dr. Anna-Lisa Paul | (352) 273-8029 | alp@ufl.edu | 160 CGRC | Administration |
Dr. Steven Madore | (352) 273-8038 | smadore@ufl.edu | 156 CGRC | Administration |
Heather Voet | (352) 273-9461 | hvoet@ufl.edu | 161 CGRC | Administration |
Administration | ||||
Business Services | ||||
Name/Title/Department | Phone | Location | Business Services | |
Heather Voet Associate Director of Administration Business Services | (352) 273-9461 | hvoet@ufl.edu | 161 CGRC | Business Services |
Patrick Carrao Finance Manager Business Services | (352) 273-8027 | pbcarrao@ufl.edu | 163 CGRC | Business Services |
Erica Boyd Human Resources Generalist III Business Services | (352) 273-8271 | ericalboyd@ufl.edu | 158 CGRC | Business Services |
Tina Hasko Business Administrative Specialist III Business Services | (352) 273-8048 | thasko@ufl.edu | 154 CGRC | Business Services |
Mackenzie Madore Administrative Specialist II Business Services | (352) 273-8065 | mmadore@ufl.edu | 157 CGRC | Business Services |
Tensi Krpan Administrative Specialist II Business Services | (352) 273-8026 | tenser9@ufl.edu | 181 CGRC | Business Services |
Kimberly Backer-Kelley | (352) 273-5341 | klbk@ufl.edu | 185 CGRC | Business Services |
Business Services | ||||
Cyberinfrastructure | ||||
Name/Title/Department | Phone | Location | Cyberinfrastructure | |
Clinton Collins Cyberinfrastructure Director Cyberinfrastructure | (352) 273-9274 | clintc@ufl.edu | 155 CGRC | Cyberinfrastructure |
Ben Thebaut IT Analyst II Cyberinfrastructure | (352) 273-6814 | ben.thebaut@ufl.edu | 188 CGRC | Cyberinfrastructure |
Cameron Smith Systems Administrator/Programmer II Cyberinfrastructure | (352) 273-9651 | pc.smith@ufl.edu | 188 CGRC | Cyberinfrastructure |
Manuel Luciano Systems Administrator/Programmer II Cyberinfrastructure | (352) 273-8054 | manuel.luciano@ufl.edu | 188 CGRC | Cyberinfrastructure |
Daniel Tarlini IT Analyst I Cyberinfrastructure | (352) 273-8170 | tarlinid@ufl.edu | 188 CGRC | Cyberinfrastructure |
Cyberinfrastructure | ||||
UF | ICBR Communications | Communications | |||
Name/Title/Department | Phone | Location | Communications | |
Chris Dillon Communications Section Director Communications | (352) 273-8168 | csdillon@ufl.edu | 162 CGRC | Communications |
Communications | ||||
Bioinformatics | ||||
Name/Title/Department | Phone | Location | Bioinformatics | |
Dr. Alberto Riva Scientific Director Bioinformatics | (352) 294-5475 | ariva@ufl.edu | 191 CGRC | Bioinformatics |
Dr. Fahong Yu Scientist Bioinformatics | (352) 273-8064 | fyu@ufl.edu | 191 CGRC | Bioinformatics |
Dr. Tongjun Gu Assistant Scientist Bioinformatics | (352) 273-8058 | tgu@ufl.edu | 191 CGRC | Bioinformatics |
Bioinformatics | ||||
Cytometry | ||||
Name/Title/Department | Phone | Location | Cytometry | |
Dr. Mariza Miranda Scientific Director Cytometry | (352) 273-8185 | marizamiranda@ufl.edu | 292 CGRC | Cytometry |
Doug Smith Senior Laboratory Technician Cytometry | (352) 392-1745 | dugsmith@ufl.edu | LG-164 | Cytometry |
Dr. Daniil Shabashvili Core Research Specialist II Cytometry | (352) 273-8186 | CGRC 292 | Cytometry | |
Alexander Linares Core Research Facility Technician III Cytometry | (352) 273-6032 | a.linares@ufl.edu | CGRC 292 | Cytometry |
Cytometry | ||||
Electron Microscopy | ||||
Name/Title/Department | Phone | Location | Electron Microscopy | |
Paul R. Chipman Scientific Director Electron Microscopy | (352) 294-1790 | pchipman@ufl.edu | 1012 MCS | Electron Microscopy |
Karen Kelley Core Research Facility Specialist III Electron Microscopy | (352) 273-8547 | vau@ufl.edu | 1012 MCS / 185 CGRC | Electron Microscopy |
Rudy Alvarado Core Research Facility Specialist I Electron Microscopy | (352) 846-0251 | ralvaradojr@ufl.edu | 1012 MCS | Electron Microscopy |
Mary Gragg OPS Lab Technician Electron Microscopy | (352) 846-0251 | mary.gragg@ufl.edu | 1012 MCS | Electron Microscopy |
Electron Microscopy | ||||
Gene Expression & Genotyping | ||||
Name/Title/Department | Phone | Location | Gene Expression & Genotyping | |
Dr. Yanping Zhang Scientific Director Gene Expression & Genotyping | (352) 273-8043 | yanp@ufl.edu | 178F CGRC | Gene Expression & Genotyping |
Brandon Pate Core Research Facility Specialist II Gene Expression & Genotyping | (352) 273-8036 | Bpate1@ufl.edu | 178 CGRC | Gene Expression & Genotyping |
Mark Renshaw Core Research Facility Specialist II Gene Expression & Genotyping | (352) 273-8036 | marenshaw@ufl.edu | 178 CGRC | Gene Expression & Genotyping |
Yasemin Can Core Research Facility Technician III Gene Expression & Genotyping | (352) 273-8036 | ycan@ufl.edu | 178 CGRC | Gene Expression & Genotyping |
Sewande Mudiyanselage Student Assistant Gene Expression & Genotyping | (352) 273-8036 | s.mudiyanselage@ufl.edu | 178 CGRC | Gene Expression & Genotyping |
Gene Expression & Genotyping | ||||
Monoclonal Antibody | ||||
Name/Title/Department | Phone | Location | Monoclonal Antibody | |
Dr. Angel Sampson Scientific Director Monoclonal Antibody | (352) 273-8039 | angel.sampson@ufl.edu | 175 CGRC | Monoclonal Antibody |
Shadi Bootorabi Senior Biological Scientist Monoclonal Antibody | (352) 273-8041 | shb@ufl.edu | 171A CGRC | Monoclonal Antibody |
Katrina Witas Core Research Facility Technician III Monoclonal Antibody | (352) 273-8040 | kaekelly@ufl.edu | 171 CGRC | Monoclonal Antibody |
Monoclonal Antibody | ||||
NextGen DNA Sequencing | ||||
Name/Title/Department | Phone | Location | NextGen DNA Sequencing | |
Dr. David Moraga Scientific Director NextGen DNA Sequencing | (352) 273-8053 | moraga@ufl.edu | 178J CGRC | NextGen DNA Sequencing |
Dr. Diansy Zincke Core Research Facility Specialist III NextGen DNA Sequencing | (352) 273-8050 | dzincke@ufl.edu | 178 CGRC | NextGen DNA Sequencing |
Dr. Liming Zhao Core Research Facility Specialist II NextGen DNA Sequencing | (352) 273-8050 | lmzhao@ufl.edu | 178 CGRC | NextGen DNA Sequencing |
Xiao Hui Zhou Core Research Facility Technician III NextGen DNA Sequencing | (352) 273-8050 | zxh@ufl.edu | 178 CGRC | NextGen DNA Sequencing |
Benjamin Hoffman Core Research Facility Technician III NextGen DNA Sequencing | (352) 273-8050 | semplar@ufl.edu | 178 CGRC | NextGen DNA Sequencing |
Daina Elsayed OPS Lab Technican NextGen DNA Sequencing | (352) 273-8050 | relsayed@ufl.edu | 178 CGRC | NextGen DNA Sequencing |
NextGen DNA Sequencing | ||||
Proteomics & Mass Spectrometry | ||||
Name/Title/Department | Phone | Location | Proteomics & Mass Spectrometry | |
Dr. Jin Koh Scientific Director Proteomics & Mass Spectrometry | (352) 273-8059 | jinkoh@ufl.edu | 168A CGRC | Proteomics & Mass Spectrometry |
Ran Zheng Core Research Facility Specialist II Proteomics & Mass Spectrometry | (352) 273-8061 | ranzheng@ufl.edu | 169 CGRC | Proteomics & Mass Spectrometry |
Ning Zhu Core Research Facility Specialist II Proteomics & Mass Spectrometry | (352) 273-8067 | nzhu@ufl.edu | 169 CGRC | Proteomics & Mass Spectrometry |
Fanchao Zhu Core Research Facility Specialist I Proteomics & Mass Spectrometry | (352) 273-8060 | fzhu9482@ufl.edu | 169 CGRC | Proteomics & Mass Spectrometry |
Proper Citation:
University of Florida ICBR Bioinformatics Core Facility, RRID:SCR_019120
ICBR-Bioinformatics@ad.ufl.edu
(352) 273-8049