Dr. Liming Zhao

Core Research Facility Specialist II

(352) 273-8050
lmzhao@ufl.edu
178 CGRC

Bio

Not available at this time

Skills and Specialization

Not available at this time

Publications

YearPublication TitleCorePersonnel
2020Malignant round cell tumor with SS18‐POU5F1 fusion: is it a myoepithelial neoplasm, a synovial sarcoma or a new entity?Gene Expression & GenotypingYanping Zhang
2021Destabilization of Immersed Dense Granular Material Submitted to Localized Fluidization: An Experimental and Numerical StudyGene Expression & GenotypingYanping Zhang
2022Low-frequency variants in mildly symptomatic vaccine breakthrough infections presents a doubled-edged swordGene Expression & GenotypingYanping Zhang
2022Endocrine, immune and renal toxicity in male largemouth bass after chronic exposure to glyphosate and RodeoGene Expression & GenotypingYanping Zhang
2022First in class multifunctional non classical antifolates inhibits thymidylate synthase and extends survival in pancreatic cancer modelCytometryPatrick Kellish
2022Detection of PD-L1–Expressing Myeloid Cell Clusters in the Hyaluronan-Enriched Stroma in Tumor Tissue and Tumor-Draining Lymph NodesCytometryMariza Miranda
2021Conspecific and heterospecific pheromones stimulate dispersal of entomopathogenic nematodes during quiescenceMonoclonal AntibodyAngel Sampson
2021Transfer of oral bacteria to the fetus during late gestationBioinformaticsTongjun Gu
2021Bioinformatics Core Survey Highlights the Challenges Facing Data Analysis FacilitiesBioinformaticsAlberto Riva
2022PRC2 Inhibitors Overcome Glucocorticoid Resistance Driven by NSD2 Mutation in Pediatric Acute Lymphoblastic LeukemiaBioinformaticsAlberto Riva
2022Discordance between HIV-1 Population in Plasma at Rebound after Structured Treatment Interruption and Archived Provirus Population in Peripheral Blood Mononuclear CellsBioinformaticsAlberto Riva
2022Rapid Emergence and Spread of Severe Acute Respiratory Syndrome Coronavirus 2 Gamma (P.1) Variant in HaitiBioinformaticsAlberto Riva
2022Acquired Resistance to EZH2 Inhibitor GSK343 Promotes the Differentiation of Human DLBCL Cell Lines toward an ABC-Like PhenotypeBioinformaticsAlberto Riva
2022DNMT3A harboring leukemia-associated mutations directs sensitivity to DNA damage at replication forksBioinformaticsAlberto Riva
2022Phylogenetic-informed graph deep learning to classify dynamic transmission clusters in infectious disease epidemicsBioinformaticsAlberto Riva
2021Methylscaper: an R/Shiny app for joint visualization of DNA methylation and nucleosome occupancy in single-molecule and single-cell dataBioinformaticsAlberto Riva
2021Functional CRISPR Screening Identifies Ptprg As a Driver of Migration and Adhesion in NSD2-E1099K ALLBioinformaticsAlberto Riva
2021Dnmt3a Mutations in the Hematopoietic System Promote Colitis-Associated Colon Cancer: A Model of Clonal Hematopoiesis in Solid TumorsBioinformaticsAlberto Riva
2021Adenylate Kinase 2 Is a Selective Multiple Myeloma Cell Dependency That Is Preferentially Essential in NSD2-Overexpressing CellsBioinformaticsAlberto Riva
2021Dysregulation of Epigenetic Landscape Uncovered the Mechanisms Underlying the Relapse of Pediatric Acute Lymphoblastic Leukemia with NSD2 MutationBioinformaticsAlberto Riva
2021CLONAL HEMATOPOIESIS DRIVEN BY PARTIAL DNMT3A LOSS CONTRIBUTES TO AN AGGRESSIVE PHENOTYPE OF COLITIS-ASSOCIATED COLON CANCERBioinformaticsAlberto Riva
2021Examination of CA1 Hippocampal DNA Methylation as a Mechanism for Closing of Estrogen's Critical WindowBioinformaticsAlberto Riva
2021HDAC8 activity regulates stress induced phenotype switching in melanomaBioinformaticsAlberto Riva
2021SARS-CoV-2 infection of BNT162b2(mRNA)-vaccinated individuals is not restricted to variants of concern or high-risk exposure environmentsBioinformatics, Gene Expression & Genotyping, NextGen DNA SequencingAlberto Riva, Yanping Zhang, David Moraga
2022SARS-CoV-2 Delta vaccine breakthrough transmissibility in Alachua County, FloridaBioinformatics, Gene Expression & Genotyping, NextGen DNA SequencingAlberto Riva, Yanping Zhang, David Moraga
2022Low-frequency variants in mildly symptomatic vaccine breakthrough infections presents a doubled-edged swordBioinformatics, Gene Expression & Genotyping, NextGen DNA SequencingAlberto Riva, Yanping Zhang, David Moraga
2021SARS-CoV-2 shifting transmission dynamics and hidden reservoirs potentially limit efficacy of public health interventions in ItalyBioinformaticsAlberto Riva
2021Brain tissue transcriptomic analysis of SIV-infected macaques identifies several altered metabolic pathways linked to neuropathogenesis and poly (ADP-ribose) polymerases (PARPs) as potential therapeutic targetsBioinformatics, NextGen DNA SequencingAlberto Riva, David Moraga
2021Effects of photo-stimulation with laser or LED on the composition of Xanthan gum produced in media containing distilled water or dialyzed or not produced water by means of Raman spectroscopyNextGen DNA SequencingDavid Moraga
2021Systematic assessment of long-read RNA-seq methods for transcript identification and quantificationffects of photo-stimulation with laser or LED on the composition of Xanthan gum produced in media containing distilled water or dialyzed or not produced water by means of Raman spectroscopyNextGen DNA SequencingDavid Moraga
2021Novel application of single-cell next-generation sequencing for determination of intratumoral heterogeneity of canine osteosarcoma cell linesBioinformaticsAlberto Riva
2021Dnmt3b Catalytic Activity is critical for its tumour suppressor function in lymphomagenesis and is associated with c-Met oncogenic signalingBioinformaticsAlberto Riva
2021Exertional heat stroke leads to concurrent long-term epigenetic memory, immunosuppression and altered heat shock response in female miceBioinformaticsAlberto Riva
2021Analysis of canine myeloid-derived suppressor cells (MDSCs) utilizing fluorescence-activated cell sorting, RNA protection mediums to yield quality RNA for single-cell RNA sequencingBioinformatics, CytometryAlberto Riva, Andria Doty
2021Microglial FACS for Robust RNA Recovery for Next-Generation SequencingCytometryAndria Doty
2021The Value of Integrating Fluorescent Imaging and Immunohistochemistry for Future Anatomical Studies in Aesthetic Surgery: Lessons From the Cerebrospinal Fluid (CSF) Circulatory System of Human Nerves and BrainCytometryDoug Smith
2021A robust method of nuclei isolation for single-cell RNA sequencing of solid tissues from the plant genus PopulusCytometryAndria Doty, Mariza Miranda
2021Biological features between miRNA and their targets are unveiled from deep learning modelsBioinformaticsTongjun Gu
2021Sequencing of Argonaute-bound microRNA/mRNA hybrids reveals regulation of the unfolded protein response by microRNA-320aBioinformaticsTongjun Gu
2020miTAR: a hybrid deep learning-based approach for predicting miRNA targetsBioinformaticsTongjun Gu
2020Uterine infusion of bacteria alters the transcriptome of bovine oocytesBioinformaticsFahong Yu
2021Azithromycin and Ciprofloxacin Can Promote Antibiotic Resistance in Biosolids and Biosolids-Amended SoilsBioinformaticsFahong Yu
2022Endocrine, immune and renal toxicity in male largemouth bass after chronic exposure to glyphosate and Rodeo®BioinformaticsFahong Yu
2021Clinical efficacy of spray-based heat-treated lactobacilli in canine atopic dermatitis: a preliminary, open-label, uncontrolled studyBioinformatics, Gene Expression & Genotyping Fahong Yu, Yanping Zhang
2021Dissemination mechanisms of NDM genes in hospitalized patientsBioinformaticsFahong Yu
2020Dissemination Mechanisms of New Delhi Metallo-β-lactamase Genes in Hospitalized PatientsBioinformaticsFahong Yu
2021Genomic and Targeted Approaches Unveil the Cell Membrane as a Major Target of the Antifungal Cytotoxin Amantelide ABioinformaticsTongjun Gu
2021Comparative structural, biophysical, and receptor binding study of true type and wild type AAV2 Electron MicroscopyPaul Chipman
2021pH-Induced Conformational Changes of Human Bocavirus CapsidsElectron MicroscopyPaul Chipman
2022Characterization of the Serpentine Adeno-Associated Virus (SAAV) Capsid Structure: Receptor Interactions and AntigenicityElectron MicroscopyPaul Chipman
2022Structural characterization of an envelope-associated adeno-associated virus type 2 capsidElectron MicroscopyPaul Chipman
2021Improved Genome Packaging Efficiency of Adeno-associated Virus Vectors Using Rep HybridsElectron MicroscopyPaul Chipman
2021Completion of the AAV Structural Atlas: Serotype Capsid Structures Reveals Clade-Specific FeaturesElectron MicroscopyPaul Chipman
2021Structurally Mapping Antigenic Epitopes of Adeno-associated Virus 9: Development of Antibody Escape VariantsElectron MicroscopyPaul Chipman
2020Structural Characterization of Cuta- and Tusavirus: Insight into Protoparvoviruses Capsid MorphologyElectron MicroscopyPaul Chipman
2020Structural characterization of a bat Adeno-associated virus capsidElectron MicroscopyPaul Chipman
2020Characterization of AAV-Specific Affinity Ligands: Consequences for Vector Purification and Development StrategiesElectron MicroscopyPaul Chipman
2022Carry-over effects of dry period heat stress on the mammary gland proteome and phosphoproteome in the subsequent lactation of dairy cowsProteomics & Mass SpectrometryJin Koh, Ning Zhu, Fanchao Zhu
2013Quantitative proteomics of vitreous humor to identify potential markers involved in the induction of posterior vitreous detachmentProteomics & Mass SpectrometrySixue Chen, Jin Koh
2020Proteomics data of SNF1-related protein kinase 2.4 interacting proteins revealed by immunoprecipitation-mass spectrometryProteomics & Mass SpectrometrySixue Chen, Jin Koh
2015Spaceflight Induces Specific Alterations in the Proteomes of ArabidopsisProteomics & Mass Spectrometry, AdministrationJin Koh, Anna-Lisa Paul
2018Follicular fluid exosomes act on the bovine oocyte to improve oocyte competence to support development and survival to heat shockProteomics & Mass SpectrometryJin Koh
2017Remodeling of the Streptococcus mutans proteome in response to LrgAB and external stressesProteomics & Mass SpectrometryJin Koh
2019Label-free and iTRAQ proteomics analysis in the liver of zebrafish (Danio rerio) following dietary exposure to the organochlorine pesticide dieldrinProteomics & Mass SpectrometryJin Koh
2020Diversity in A? deposit morphology and secondary proteome insolubility across models of Alzheimer-type amyloidosisProteomics & Mass SpectrometryJin Koh, Fanchao Zhu
2017Uncovering stem cell differentiation factors for salivary gland regeneration by quantitative analysis of differential proteomesProteomics & Mass SpectrometryJin Koh
2018CD117+ Exosomes and Mast Cells From Hereditary Alpha Tryptasemia Patients Reveal Unique Phosphorylation, Lipidomics, and Proteomics Profiles: Category Award (Small Intestine): Presidential Poster AwardProteomics & Mass SpectrometryJin Koh
2020Jasmonate induced alternative splicing responses in ArabidopsisProteomics & Mass SpectrometryJin Koh, Sixue Chen
2020Secretome Analysis of Inductive Signals for BM-MSC Transdifferentiation into Salivary Gland ProgenitorsProteomics & Mass SpectrometryJin Koh, Sixue Chen
2020Bisphenol A and bisphenol S disruptions of the mouse placenta and potential effects on the placenta-brain axisProteomics & Mass SpectrometryJin Koh, Sixue Chen, Ning Zhu
2020Identification of proteins associated with two diverse Caulobacter PhicbkvirusesProteomics & Mass SpectrometrySixue Chen, Ran Zheng, Fanchao Zhu
2016Genome-wide identification and homeolog-specific expression analysis of the SnRK2 genes in Brassica napus guard cellsProteomics & Mass SpectrometryJin Koh, Sixue Chen, Ning Zhu
2019Hepatic proteome network data in zebrafish (Danio rerio) liver following dieldrin exposureProteomics & Mass SpectrometryJin Koh
2019The Proteome of Pancreatic Cancer?Derived Exosomes Reveals Signatures Rich in Key Signaling PathwaysProteomics & Mass SpectrometryFanchao Zhu
2018Quantitative assessment of intestinal stiffness and associations with fibrosis in human inflammatory bowel diseaseCytometryAndria Doty
2016The differential frequency of Lineage?CRTH2?CD45+NKp44?CD117?CD127+ILC subset in the inflamed terminal ileum of patients with Crohn’s diseaseCytometryAndria Doty
2020A novel approach to study markers of dopamine signaling in peripheral immune cellsCytometryAndria Doty
2017Increased Mucosal IL-22 Production of an IL-10RA Mutation Patient Following Anakinra Treatment Suggests Further Mechanism for Mucosal HealingCytometryAndria Doty
2016Aryl hydrocarbon receptor signaling involves in the human intestinal ILC3/ILC1 conversion in the inflamed terminal ileum of Crohn’s disease patientsCytometryAndria Doty
2019Dopamine transporter is dysregulated on the peripheral immune cells of drug naïve Parkinson's Disease patientsCytometryAndria Doty
2013In vitro studies on the role of seminal plasma proteins on the interaction between polymorphonuclear neutrophils (PMNs) and spermatozoa in the horseCytometryAndria Doty
2020Novel CD33 antibodies unravel localization, biology and therapeutic implications of CD33 isoformsCytometryAndria Doty
2019A New Ball for an Old Trick: Paramagnetic Cell Sorting of Human Mesenchymal Stem Cells from Adipose TissueCytometryAndria Doty
2019Characterization and printability of Sodium alginate -Gelatin hydrogel for bioprinting NSCLC co-cultureCytometryMariza Miranda
2021Cytotoxic and chemosensitizing effects of glycoalkaloidic extract on 2D and 3D models using RT4 and patient derived xenografts bladder cancer cellsCytometryMariza Miranda
2017Structural Insights into Human BocaparvovirusesElectron MicroscopyPaul Chipman
2016Cryo-electron Microscopy Reconstruction and Stability Studies of the Wild Type and the R432A Variant of Adeno-associated Virus Type 2 Reveal that Capsid Structural Stability Is a Major Factor in Genome PackagingElectron MicroscopyPaul Chipman
2020Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8Electron MicroscopyPaul Chipman
2018Atomic structure of a rationally engineered gene delivery vector, AAV2.5Electron MicroscopyPaul Chipman
2017Atomic Resolution Structures of Human Bufaviruses Determined by Cryo-Electron MicroscopyElectron MicroscopyPaul Chipman
2015Adeno-Associated Virus Serotype 1 (AAV1)- and AAV5-Antibody Complex Structures Reveal Evolutionary Commonalities in Parvovirus Antigenic ReactivityElectron MicroscopyPaul Chipman
2018AAV6 K531 serves a dual function in selective receptor and antibody ADK6 recognitionElectron MicroscopyPaul Chipman
2017Atomic Resolution Structure of the Oncolytic Parvovirus LuIII by Electron Microscopy and 3D Image ReconstructionElectron MicroscopyPaul Chipman
2018High-Resolution Structural Characterization of a New Adeno-associated Virus Serotype 5 Antibody Epitope toward Engineering Antibody-Resistant Recombinant Gene Delivery VectorsElectron MicroscopyPaul Chipman
2013Membrane curvature in flavivirusesElectron MicroscopyPaul Chipman
2020Molecular biology and structure of a novel penaeid shrimp densovirus elucidate convergent parvoviral host capsid evolutionElectron MicroscopyPaul Chipman
2016Microbatch Mixing: “Shaken not Stirred”, a Method for Macromolecular Microcrystal Production for Serial CrystallographyElectron MicroscopyPaul Chipman
2018Structural Characterization of Emerging Pathogenic Human ParvovirusesElectron MicroscopyPaul Chipman
2020Characterization of AAV-Specific Affinity Ligands: Consequences for Vector Purification and Development StrategiesElectron MicroscopyPaul Chipman
2016Structural Rearrangements in R432A Variant of AAV2 Affect Genome PackagingElectron MicroscopyPaul Chipman
2014Adeno-associated virus serotypes 1 and 5 – antibody complex structures reveal evolutionary commonalities in parvovirus antigenic reactivityElectron MicroscopyPaul Chipman
2016Characterizing AAV CaptureSelect Affinity Ligand InteractionsElectron MicroscopyPaul Chipman
2016Megalocytivirus infection in cultured Nile tilapia Oreochromis niloticusElectron MicroscopyKaren Kelley
2013Transgenerational Transmission of the Glossina pallidipes Hytrosavirus Depends on the Presence of a Functional SymbiomeElectron MicroscopyKaren Kelley
2021The Mechanism of Mitochondrial Injury in Alpha-1 Antitrypsin Deficiency Mediated Liver DiseaseElectron MicroscopyKaren Kelley
2022Effect of Nanosulfur Against Multidrug-Resistant Staphylococcus pseudintermedius and Pseudomonas aeruginosaElectron MicroscopyKaren Kelley
2013Immunohistochemical Detection of a Unique Protein within Cells of Snakes Having Inclusion Body Disease, a World-Wide Disease Seen in Members of the Families Boidae and PythonidaeElectron MicroscopyKaren Kelley
2013Megalocytivirus infection in orbiculate batfish Platax orbicularisElectron MicroscopyKaren Kelley
2015Carp Edema Virus Disease (CEVD) / Koi Sleepy Disease (KSD)1Electron MicroscopyKaren Kelley
2020Isolation, Characterization, and Complete Genome Sequence of a Bradyrhizobium Strain Lb8 From Nodules of Peanut Utilizing Crack Entry InfectionElectron MicroscopyKaren Kelley
2020Characterization of a novel picornavirus isolated from moribund aquacultured clownfishElectron MicroscopyKaren Kelley, Paul Chipman, Rudy Alvarado,
2015Reduced Infectivity in Cattle for an Outer Membrane Protein Mutant of Anaplasma marginaleElectron MicroscopyKaren Kelley
2017A Dimorphic and Virulence-Enhancing Endosymbiont Bacterium Discovered in Rhizoctonia solaniElectron MicroscopyKaren Kelley
2014Akashiwo sanguinea (Dinophyceae) extruding mucous from pores on the cell surfaceElectron MicroscopyKaren Kelley
2019Hierarchical self-assembly and emergent function of densely glycosylated peptide nanofibersElectron MicroscopyKaren Kelley
2017Physiological, molecular and ultrastructural analyses during ripening and over?ripening of banana (Musa spp., AAA group, Cavendish sub?group) fruit suggest characteristics of programmed cell deathElectron MicroscopyKaren Kelley
2013A method for preparing spaceflight RNAlater?fixed Arabidopsis thaliana (Brassicaceae) tissue for scanning electron microscopyElectron Microscopy, AdministrationKaren Kelley, Anna-Lisa Paul
2017In situ observations of Akashiwo sanguinea(Dinophyceae) displaying life cycle stages during blooms in a subtropical estuaryElectron MicroscopyKaren Kelley
2018Involvement of Root Hair during Rhizobial Invasion in Cultivated Peanut (Arachis hypogaea L.)Electron MicroscopyKaren Kelley
2016Genetic characterization of esocid herpesvirus 1 (EsHV1)Electron MicroscopyKaren Kelley
2019A defective release of host defense peptides is present in canine atopic skinElectron MicroscopyKaren Kelley
2014Ball Python Nidovirus: a Candidate Etiologic Agent for Severe Respiratory Disease in Python regiusElectron MicroscopyKaren Kelley
2021Injectable nanofibrillar hydrogels based on charge-complementary peptide co-assembliesElectron MicroscopyKaren Kelley, Kimberly Backer-Kelley
2015Antimicrobial dressing efficacy against mature Pseudomonas aeruginosa biofilm on porcine skin explantsMonoclonal AntibodyEdith Sampson
2013Development of a novel ex vivo porcine skin explant model for the assessment of mature bacterial biofilmsMonoclonal AntibodyEdith Sampson
2015The collagen binding protein Cnm contributes to oral colonization and cariogenicity of Streptococcus mutans OMZ175Monoclonal AntibodyEdith Sampson
2019GSTA4 mediates reduction of cisplatin ototoxicity in female miceMonoclonal AntibodyEdith Sampson
2018Deletion of a conserved transcript PG_RS02100 expressed during logarithmic growth in Porphyromonas gingivalis results in hyperpigmentation and increased tolerance to oxidative stressMonoclonal AntibodyEdith Sampson
2017Lack of pheromone reduces nematode dispersalMonoclonal AntibodyEdith Sampson
2014Streptococcus mutans OMZ175 invasion of human tissues in cultureMonoclonal AntibodyEdith Sampson
2015Development and validation of a competitive enzyme-linked immunosorbent assay for the measurement of total plasma immunoglobulins in healthy loggerhead sea (Caretta caretta) and green turtles (Chelonia mydas)Monoclonal AntibodyShadi Bootorabi
2018Transcript Profiling of MRSA Biofilms Treated with a Halogenated Phenazine Eradicating Agent: A Platform for Defining Cellular Targets and Pathways Critical to Biofilm SurvivalGene Expression & GenotypingYanping Zhang
2013The Arabidopsis Mediator complex subunits MED14/SWP and MED16/SFR6/IEN1 differentially regulate defense gene expression in plant immune responsesGene Expression & GenotypingYanping Zhang
2015Arabidopsis Elongator subunit 2 positively contributes to resistance to the necrotrophic fungal pathogens Botrytis cinerea and Alternaria brassicicolaGene Expression & GenotypingYanping Zhang
2018Exogenous Nicotinamide Adenine Dinucleotide Induces Resistance to Citrus Canker in CitrusGene Expression & GenotypingYanping Zhang
2016Effects of Long-Term Exercise on Age-Related Hearing Loss in MiceGene Expression & GenotypingYanping Zhang
2017Single-cell gene expression of the bovine blastocystGene Expression & GenotypingYanping Zhang
2019Extracellular pyridine nucleotides trigger plant systemic immunity through a lectin receptor kinase/BAK1 complexGene Expression & GenotypingYanping Zhang
2014Catechol-O-Methyltransferase Polymorphisms Predict Opioid Consumption in Postoperative PainGene Expression & GenotypingYanping Zhang
2019Increased burden of mitochondrial DNA deletions and point mutations in early-onset age-related hearing loss in mitochondrial mutator miceGene Expression & GenotypingYanping Zhang
2015Gene expression profiling leads to discovery of correlation of matrix metalloproteinase 11 and heparanase 2 in breast cancer progressionGene Expression & GenotypingYanping Zhang
2018The Arabidopsis Elongator Subunit ELP3 and ELP4 Confer Resistance to Bacterial Speck in TomatoGene Expression & GenotypingYanping Zhang
2016The Elongator complex?associated protein DRL1 plays a positive role in immune responses against necrotrophic fungal pathogens in ArabidopsisGene Expression & GenotypingYanping Zhang
2019Transcriptomic Analysis of Aedes aegypti Innate Immune System in Response to Ingestion of Chikungunya VirusGene Expression & GenotypingYanping Zhang
2013Gene expression profiling in the ovary of Queen conch (Strombus gigas) exposed to environments with high tributyltin in the British Virgin IslandsGene Expression & GenotypingYanping Zhang
2015The Arabidopsis Mediator Complex Subunit16 Is a Key Component of Basal Resistance against the Necrotrophic Fungal Pathogen Sclerotinia sclerotiorumGene Expression & GenotypingYanping Zhang
2017A lectin receptor kinase as a potential sensor for extracellular nicotinamide adenine dinucleotide in Arabidopsis thalianaGene Expression & GenotypingYanping Zhang
2013The Arabidopsis Elongator Complex Subunit2 Epigenetically Regulates Plant Immune ResponsesGene Expression & Genotyping, Bioinformatics, NextGen DNA SequencingYanping Zhang, David Moraga Amador, Fahong Yu
2018Transcriptome analysis reveals novel insights into the response of low-dose benzo(a)pyrene exposure in male tilapiaNextGen DNA SequencingDavid Moraga Amador
2018Identification of a metabolic disposal route for the oncometabolite S-(2-succino)cysteine in Bacillus subtilisNextGen DNA SequencingDavid Moraga Amador
2020Investigating the gene expression profiles of rehabilitated Florida manatees (Trichechus manatus latirostris) following red tide exposureNextGen DNA Sequencing, BioinformaticsDavid Moraga Amador, Fahong Yu
2019Endohyphal bacteria associated with virulence, increased expression of fumonisin biosynthetic genes, and production of fumonisin and macroconidia in Fusarium fujikuroi W343NextGen DNA Sequencing, Electron MicroscopyDavid Moraga Amador, Karen Kelley
2018Tissue-Based Mapping of the Fathead Minnow (Pimephales promelas) Transcriptome and ProteomeNextGen DNA Sequencing, BioinformaticsDavid Moraga Amador, Fahong Yu
2018Gene expression profile and molecular pathway datasets resulting from benzo(a)pyrene exposure in the liver and testis of adult tilapiaNextGen DNA SequencingDavid Moraga Amador
2013Custom microarray construction and analysis for determining potential biomarkers of subchronic androgen exposure in the Eastern Mosquitofish (Gambusia holbrooki)NextGen DNA Sequencing, BioinformaticsDavid Moraga Amador, Fahong Yu
2020Enabling the Spaceflight Methylome: DNA Isolated from Plant Tissues Preserved in RNAlater® Is Suitable for Bisulfite PCR Assay of Genome MethylationNextGen DNA Sequencing, AdministrationDavid Moraga Amador, Anna-Lisa Paul
2020Brain tissue transcriptomic analysis of SIV-infected macaques identifies Poly (ADP-ribose) polymerases (PARPs) as potential biomarkers for neuropathogenesisBioinformaticsDavid Moraga Amador, Alberto Riva
2020Combining epiGBS markers with long read transcriptome sequencing to assess differentiation associated with habitat in Reynoutria (aka Fallopia)NextGen DNA SequencingDavid Moraga Amador
2013Modified Library Construction Method for 3-5kb Illumina Mate-pair LibrariesNextGen DNA SequencingDavid Moraga Amador, Nedka Panayotova, Xiao H. Zhou
2018S?Succinylcysteine Breakdown – How Bacillus subtilis Utilizes an Inevitable Product of Metabolite DamageNextGen DNA SequencingDavid Moraga Amador
2013Direct Sequencing of Linear DNA on PacBio RS Without Library PreparationNextGen DNA SequencingDavid Moraga Amador, Xiao H. Zhou
2013Library Construction for Genome-wide Bisulfite Sequencing in PlantsNextGen DNA SequencingDavid Moraga Amador
2019Spaceflight-induced alternative splicing during seedling development in Arabidopsis thalianaBioinformatics, AdministrationW. Brad Barbazuk, Anna-Lisa Paul
2013Complete Genome Sequence of Serratia liquefaciens Strain ATCC 27592NextGen DNA SequencingNedka Panayotova
2013Complete Genome Sequence of Carnobacterium gilichinskyi Strain WN1359T (DSM 27470T)NextGen DNA SequencingNedka Panayotova
2014Tyrosine phosphorylation of protein kinase complex BAK1/BIK1 mediates Arabidopsis innate immunityProteomics & Mass SpectrometrySixue Chen, Ning Zhu
2015Gold Nanoparticle-Enabled Blood Test for Early Stage Cancer Detection and Risk AssessmentProteomics & Mass SpectrometrySixue Chen, Ning Zhu
2013Proteomic profiling of developing cotton fibers from wild and domesticated Gossypium barbadenseProteomics & Mass SpectrometrySixue Chen, Jin Koh
2019Streamlining DNA Sequencing and Bioinformatics Analysis Using Software ContainersBioinformaticsW. Brad Barbazuk, Tongjun Gu, Alberto Riva, Fahong Yu
2015Comparative Proteomic Analysis of Brassica napus in Response to Drought StressProteomics & Mass SpectrometrySixue Chen, Ning Zhu, Jin Koh
2019Physiological and comparative proteomic analyses of saline-alkali NaHCO3-responses in leaves of halophyte Puccinellia tenuifloraProteomics & Mass SpectrometrySixue Chen, Ning Zhu
2018Proteome analysis of Aspergillus flavus isolate-specific responses to oxidative stress in relationship to aflatoxin production capabilityProteomics & Mass SpectrometrySixue Chen, Jin Koh
2016Clinical effects of driver somatic mutations on the outcomes of patients with myelodysplastic syndromes treated with allogeneic hematopoietic stem-cell transplantationBioinformaticsAlberto Riva
2017UTX/KDM6A loss enhances the malignant phenotype of multiple myeloma and sensitizes cells to EZH2 inhibitionBioinformaticsAlberto Riva
2014Multiplex mapping of chromatin accessibility and DNA methylation within targeted single molecules identifies epigenetic heterogeneity in neural stem cells and glioblastomaBioinformaticsAlberto Riva
2017DNA methylation of synaptic genes in the prefrontal cortex is associated with aging and age-related cognitive impairmentBioinformaticsAlberto Riva
2015BigQ: a NoSQL based framework to handle genomic variants in i2b2BioinformaticsAlberto Riva
2018SIRT1/HERC4 Locus Associated With Bisphosphonate?Induced Osteonecrosis of the Jaw: An Exome?Wide Association AnalysisBioinformaticsAlberto Riva
2013PASTA: splice junction identification from RNA-Sequencing dataBioinformaticsAlberto Riva
2014Influence of the Prader-Willi syndrome imprinting center on the DNA methylation landscape in the mouse brainBioinformaticsAlberto Riva
2019A mutation in histone H2B represents a new class of oncogenic driverBioinformaticsAlberto Riva
2017Dissecting low atmospheric pressure stress: transcriptome responses to the components of hypobaria in ArabidopsisBioinformatics, AdministrationAlberto Riva, Anna-Lisa Paul
2017Genome-wide prioritization and transcriptomics reveal novel signatures associated with thiazide diuretics blood pressure responseBioinformaticsAlberto Riva
2019Catalytically inactive Dnmt3b rescues mouse embryonic development by accessory and repressive functionsBioinformaticsAlberto Riva
2016Nitrogen starvation?induced accumulation of triacylglycerol in the green algae: evidence for a role for ROC40, a transcription factor involved in circadian rhythmProteomics & Mass SpectrometrySixue Chen, Jin Koh, Ning Zhu
2015The murine Pbx1-d lupus susceptibility allele accelerates mesenchymal stem cell differentiation and impairs their immunosuppressive functionBioinformaticsAlberto Riva, Fahong Yu
2013Sugar beet M14 glyoxalase I gene can enhance plant tolerance to abiotic stressesProteomics & Mass SpectrometrySixue Chen
2018A gain of function mutation in the NSD2 histone methyltransferase drives glucocorticoid resistance of acute lymphoblastic leukemiaBioinformaticsAlberto Riva
2020Clinical Utility of Pharmacogene Panel?Based Testing in Patients Undergoing Percutaneous Coronary InterventionBioinformaticsAlberto Riva
2020Seaweed natural products modify the host inflammatory response via Nrf2 signaling and alter colon microbiota composition and gene expressionProteomics & Mass SpectrometrySixue Chen, Fanchao Zhu
2018Mechanism sharing between genetic and gestational hypoxia-induced cardiac anomaliesBioinformaticsAlberto Riva
2014Thiol?based redox proteins in abscisic acid and methyl jasmonate signaling in Brassica napus guard cellsProteomics & Mass SpectrometrySixue Chen, Ning Zhu
2019DNMT3A with Leukemia-Associated Mutations Directs Sensitivity to DNA Damage at Replication ForksBioinformaticsAlberto Riva
2017Patterns of Arabidopsis gene expression in the face of hypobaric stressBioinformatics, AdministrationAlberto Riva, Anna-Lisa Paul
2019Identification of Genetic Vulnerabilities and Synthetic-Lethal Targets in NSD2-High Multiple MyelomaBioinformaticsAlberto Riva
2019A Gain of Function Mutation in the NSD2 Histone Methyltransferase Drives Glucocorticoid Resistance Via Blocking Receptor Auto-Induction and BIM/Bmf Expression in ALLBioinformaticsAlberto Riva
2013Proteomic Analysis of Salt Tolerance in Sugar Beet Monosomic Addition Line M14Proteomics & Mass SpectrometrySixue Chen, Ning Zhu, Jin Koh
2019Splicing repressor HNRNPC is an indispensable and'druggable'target in acute myeloid leukemiaBioinformaticsAlberto Riva
2019NaCl-responsive ROS scavenging and energy supply in alkaligrass callus revealed from proteomic analysisProteomics & Mass SpectrometrySixue Chen
2019NetZen: A comprehensive network-based pathway and target discovery platformBioinformaticsAlberto Riva
2019Comparative proteomics and metabolomics of JAZ7-mediated drought tolerance in ArabidopsisProteomics & Mass SpectrometrySixue Chen
2019ESTIMATING THE CLINICAL VALUE OF A CUSTOMIZED CARDIOVACULAR PHARMACOGENETICS PANEL.BioinformaticsAlberto Riva
2017Salinity-Induced Palmella Formation Mechanism in Halotolerant Algae Dunaliella salina Revealed by Quantitative Proteomics and PhosphoproteomicsProteomics & Mass SpectrometrySixue Chen
2018PREVALENCE OF ACTIONABLE GENOTYPES AND DRUG EXPOSURE AMONG PATIENTS UNDERGOING CARDIAC CATHETERIZATION IN THE UNIVERSITY OF FLORIDA PERSONALIZED MEDICINE PROGRAM.BioinformaticsAlberto Riva
2018Metabolomics of Early Stage Plant Cell–Microbe Interaction Using Stable Isotope LabelingProteomics & Mass SpectrometrySixue Chen
2017SIRT1 SNPs Associated with Bisphosphonate-related Osteonecrosis of the Jaw (ONJ).BioinformaticsAlberto Riva
2013Quantitative proteomics of tomato defense against Pseudomonas syringae infectionProteomics & Mass SpectrometrySixue Chen, Ning Zhu, Jin Koh
2018DAMON: an open source framework for reliable and reproducible analysis pipelinesBioinformaticsAlberto Riva
2017Metabolomics and Proteomics of Brassica napus Guard Cells in Response to Low CO2Proteomics & Mass SpectrometrySixue Chen, Ning Zhu
2017Data Fusion Approach for Learning Transcriptional Bayesian NetworksBioinformaticsAlberto Riva
2015Metabolomic Responses of Guard Cells and Mesophyll Cells to BicarbonateProteomics & Mass SpectrometrySixue Chen
2017Patterns of ArabidopsisBioinformatics, AdministrationAlberto Riva, Anna-Lisa Paul
2020Plant Chloroplast Stress Response: Insights from Thiol Redox ProteomicsProteomics & Mass SpectrometrySixue Chen
2016Identification of Idd22 Candidate Genes Using a Bioinformatics ApproachBioinformaticsAlberto Riva
2015Gene-Expression Novelty in Allopolyploid Cotton: A Proteomic PerspectiveProteomics & Mass SpectrometrySixue Chen, Jin Koh
2016FINDING A NEEDLE IN THE HAYSTACK FOR THIAZIDE DIURETIC RESPONSE USING GENOMICS/TRANSCRIPTOMICS IN THE PHARMACOGENOMIC EVALUATION OF ANTIHYPERTENIVE RESPONSES (PEAR) STUDY.: PT-24BioinformaticsAlberto Riva
2018Deciphering drought?induced metabolic responses and regulation in developing maize kernelsProteomics & Mass SpectrometrySixue Chen
2015Redox proteomics of tomato in response to Pseudomonas syringae infectionProteomics & Mass SpectrometrySixue Chen, Ning Zhu
2014Information Processing at the Cellular Level: Beyond the DogmaBioinformaticsAlberto Riva
2016PARylation of the forkhead?associated domain protein DAWDLE regulates plant immunityProteomics & Mass SpectrometrySixue Chen, Ning Zhu
2018Sex-specific airway hyperreactivity and sex-specific transcriptome remodeling in neonatal piglets challenged with intra-airway acidBioinformaticsTongjun Gu
2015Advances in understanding CO2 responsive plant metabolomes in the era of climate changeProteomics & Mass SpectrometrySixue Chen
2018Dicer cleaves 5?-extended microRNA precursors originating from RNA polymerase II transcription start sitesBioinformaticsTongjun Gu
2016Ubiquitin-Like Proteasome System Represents a Eukaryotic-Like Pathway for Targeted Proteolysis in ArchaeaProteomics & Mass SpectrometrySixue Chen
2017Modification of the Streptococcus mutans transcriptome by LrgAB and environmental stressorsBioinformaticsTongjun Gu
2015cysTMTRAQ—An Integrative Method for Unbiased Thiol-based Redox ProteomicsProteomics & Mass SpectrometrySixue Chen, Ning Zhu, Fanchao Zhu
2017GSR is not essential for the maintenance of antioxidant defenses in mouse cochlea: Possible role of the thioredoxin system as a functional backup for GSRBioinformaticsTongjun Gu
2016Quantitative proteomics and phosphoproteomics of sugar beet monosomic addition line M14 in response to salt stressProteomics & Mass SpectrometrySixue Chen, Jin Koh
2019Integrating multi-platform genomic datasets for kidney renal clear cell carcinoma subtyping using stacked denoising autoencodersBioinformaticsTongjun Gu
2014Protein Profiles Reveal Diverse Responsive Signaling Pathways in Kernels of Two Maize Inbred Lines with Contrasting Drought SensitivityProteomics & Mass SpectrometrySixue Chen
2014The ctenophore genome and the evolutionary origins of neural systemsBioinformaticsFahong Yu
2019Plant immune responses - from guard cells and local responses to systemic defense against bacterial pathogensProteomics & Mass SpectrometrySixue Chen
2014In vitro selection with artificial expanded genetic information systemsBioinformaticsFahong Yu
2016Chilling-responsive mechanisms in halophyte Puccinellia tenuiflora seedlings revealed from proteomics analysisProteomics & Mass SpectrometrySixue Chen
2015SMRT Sequencing of Long Tandem Nucleotide Repeats in SCA10 Reveals Unique Insight of Repeat Expansion StructureBioinformaticsFahong Yu
2015Fern spore germination in response to environmental factorsProteomics & Mass SpectrometrySixue Chen
2013Comparative genomic and transcriptome analyses of pathotypes of Xanthomonas citri subsp. citri provide insights into mechanisms of bacterial virulence and host rangeBioinformaticsFahong Yu
2015Phosphoproteomics technologies and applications in plant biology researchProteomics & Mass SpectrometrySixue Chen
2017Reprogramming of a defense signaling pathway in rough lemon and sweet orange is a critical element of the early response to ‘Candidatus Liberibacter asiaticus’BioinformaticsFahong Yu
2017Bicarbonate Induced Redox Proteome Changes in Arabidopsis Suspension CellsProteomics & Mass SpectrometrySixue Chen, Ning Zhu
2019Type I interferon and interferon?stimulated gene expression in oral epithelial cellsBioinformaticsFahong Yu
2016Protein Phosphorylation and Redox Modification in Stomatal Guard CellsProteomics & Mass SpectrometrySixue Chen
2016Draft genome sequence of Fusicladium effusum, cause of pecan scabBioinformaticsFahong Yu
2016Identification of thioredoxin targets in guard cell enriched epidermal peels using cysTMT proteomicsProteomics & Mass SpectrometrySixue Chen, Ning Zhu
2017Responses of the Housefly, Musca domestica, to the Hytrosavirus Replication: Impacts on Host's Vitellogenesis and ImmunityBioinformaticsFahong Yu
2020S-Nitroso-Proteome Revealed in Stomatal Guard Cell Response to Flg22Proteomics & Mass SpectrometrySixue Chen
2020Mice lacking uterine enhancer of zeste homolog 2 have transcriptomic changes associated with uterine epithelial proliferationBioinformaticsFahong Yu
2013Pilot Study Using Proteomics to Identify Predictive Biomarkers of Necrotizing Enterocolitis from Buccal Swabs in Very Low Birth Weight InfantsProteomics & Mass SpectrometrySixue Chen
2020Uterine infection alters the transcriptome of the bovine reproductive tract three months laterBioinformaticsFahong Yu
2019Directions for research and training in plant omics: Big Questions and Big DataProteomics & Mass SpectrometrySixue Chen
2018The Effect of Permethrin Resistance on Aedes aegypti Transcriptome Following Ingestion of Zika Virus Infected BloodBioinformaticsFahong Yu
2017Hydrogen Peroxide Response in Leaves of Poplar (Populus simonii × Populus nigra) Revealed from Physiological and Proteomic AnalysesProteomics & Mass SpectrometrySixue Chen
2017Identification of Gene Candidates Associated with Huanglongbing Tolerance, Using ‘Candidatus Liberibacter asiaticus’ Flagellin 22 as a Proxy to Challenge CitrusBioinformaticsFahong Yu
2016Critical Role of COI1-Dependent Jasmonate Pathway in AAL toxin induced PCD in Tomato Revealed by Comparative ProteomicsProteomics & Mass SpectrometrySixue Chen, Ning Zhu, Jin Koh
2013An EST database of the Caribbean fruit fly, Anastrepha suspensa (Diptera: Tephritidae)BioinformaticsFahong Yu
2015Salt stress response of membrane proteome of sugar beet monosomic addition line M14Proteomics & Mass SpectrometrySixue Chen, Ning Zhu, Jin Koh
2014Correlation of gene expression and contaminant concentrations in wild largescale suckers: A field-based studyBioinformaticsFahong Yu
2016New nodes and edges in the glucosinolate molecular network revealed by proteomics and metabolomics of Arabidopsis myb28/29 and cyp79B2/B3 glucosinolate mutantsProteomics & Mass SpectrometrySixue Chen, Ning Zhu
2015HPV Population Profiling in Healthy Men by Next-Generation Deep Sequencing Coupled with HPV-QUESTBioinformaticsFahong Yu
2019The C-terminal WD40 repeats on the TOPLESS co-repressor function as a protein–protein interaction surfaceProteomics & Mass SpectrometrySixue Chen
2017Redox regulation of a guard cell SNF1-related protein kinase in Brassica napus, an oilseed cropProteomics & Mass SpectrometrySixue Chen
2016Preparation of Epidermal Peels and Guard Cell Protoplasts for Cellular, Electrophysiological, and -Omics Assays of Guard Cell FunctionProteomics & Mass SpectrometrySixue Chen
2013Organ-specific remodeling of the Arabidopsis transcriptome in response to spaceflightAdministrationAnna-Lisa Paul
2017An Erwinia amylovora yjeK mutant exhibits reduced virulence, increased chemical sensitivity and numerous environmentally dependent proteomic alterationsProteomics & Mass SpectrometrySixue Chen
2013Spaceflight engages heat shock protein and other molecular chaperone genes in tissue culture cells of Arabidopsis thalianaAdministrationAnna-Lisa Paul
2021Epigenomic Regulators Elongator Complex Subunit 2 and Methyltransferase 1 Differentially Condition the Spaceflight Response in ArabidopsisAdministrationAnna-Lisa Paul
2022Plants grown in Apollo lunar regolith present stress-associated transcriptomes that inform prospects for lunar explorationAdministrationAnna-Lisa Paul
2022Effects of oxygen fertilization on damage reduction in flooded snap bean (Phaseolus vulgaris L.)AdministrationAnna-Lisa Paul
2021High Throughput Ground-Based Reduced-Gravity TestingAdministrationAnna-Lisa Paul
2021Shared Metabolic Remodeling Processes Characterize the Transcriptome of Arabidopsis thaliana within Various Suborbital Flight EnvironmentsAdministrationAnna-Lisa Paul
2019MPK4 Phosphorylation Dynamics and Interacting Proteins in Plant ImmunityProteomics & Mass SpectrometrySixue Chen
2013Fundamental plant biology enabled by the space shuttleAdministrationAnna-Lisa Paul
2014Molecular Reprogramming of Arabidopsis in Response to Perturbation of Jasmonate SignalingProteomics & Mass SpectrometrySixue Chen, Jin Koh
2016The effect of spaceflight on the gravity-sensing auxin gradient of roots: GFP reporter gene microscopy on orbitAdministrationAnna-Lisa Paul
2016Proteomic Insight into the Response of Arabidopsis Chloroplasts to DarknessProteomics & Mass SpectrometrySixue Chen
2017Genetic dissection of the Arabidopsis spaceflight transcriptome: Are some responses dispensable for the physiological adaptation of plants to spaceflight?AdministrationAnna-Lisa Paul
2014Proteomics profiling of fiber development and domestication in upland cotton (Gossypium hirsutum L.)Proteomics & Mass SpectrometrySixue Chen, Jin Koh
2017Skewing in Arabidopsis roots involves disparate environmental signaling pathwaysAdministrationAnna-Lisa Paul
2018A Phosphorylation Switch on Lon Protease Regulates Bacterial Type III Secretion System in HostProteomics & Mass SpectrometrySixue Chen
2015Phosphomimetic mutation of a conserved serine residue in Arabidopsis thaliana 14-3-3? suggests a regulatory role of phosphorylation in dimerization and target interactionsAdministrationAnna-Lisa Paul
2017Multiplex quantitative SILAC for analysis of archaeal proteomes: a case study of oxidative stress responsesProteomics & Mass SpectrometrySixue Chen, Jin Koh
2018Utilization of single?image normalized difference vegetation index (SI?NDVI) for early plant stress detectionAdministrationAnna-Lisa Paul
2016Proteome targets of ubiquitin?like samp1ylation are associated with sulfur metabolism and oxidative stress in Haloferax volcaniiProteomics & Mass SpectrometrySixue Chen
2015Spaceflight exploration in plant gravitational biologyAdministrationAnna-Lisa Paul
2015Oxidation and phosphorylation of MAP kinase 4 cause protein aggregationProteomics & Mass SpectrometrySixue Chen
2019Epigenomics in an extraterrestrial environment: organ-specific alteration of DNA methylation and gene expression elicited by spaceflight in Arabidopsis thalianaAdministrationAnna-Lisa Paul
2020Physiological Changes in Mesembryanthemum crystallinum During the C3 to CAM Transition Induced by Salt StressProteomics & Mass SpectrometrySixue Chen
2017ARG1 functions in the physiological adaptation of undifferentiated plant cells to spaceflightAdministrationAnna-Lisa Paul
2019Metabolomics of red?light?induced stomatal opening in Arabidopsis thaliana: Coupling with abscisic acid and jasmonic acid metabolismProteomics & Mass SpectrometrySixue Chen
2014Mapping by VESGEN of leaf venation patterning in Arabidopsis with bioinformatic dimensions of gene expressionAdministrationAnna-Lisa Paul
2013C4 photosynthetic machinery: insights from maize chloroplast proteomicsProteomics & Mass SpectrometrySixue Chen
2013Deployment of a fully-automated green fluorescent protein imaging system in a high arctic autonomous greenhouseAdministrationAnna-Lisa Paul
2019Overexpression of a S-Adenosylmethionine Decarboxylase from Sugar Beet M14 Increased Araidopsis Salt ToleranceProteomics & Mass SpectrometrySixue Chen
2019HSFA2 functions in the physiological adaptation of undifferentiated plant cells to spaceflightAdministrationAnna-Lisa Paul
2014Arabidopsis thaliana for spaceflight applications–preparing dormant biology for passive stowage and on orbit activationAdministrationAnna-Lisa Paul
2019Negative Regulation of Age-Related Developmental Leaf Senescence by the IAOx Pathway, PEN1, and PEN3Proteomics & Mass SpectrometrySixue Chen
2019The plant health monitoring system of the EDEN ISS space greenhouse in Antarctica during the 2018 experiment phaseAdministrationAnna-Lisa Paul
2013Integrated Proteomics and Metabolomics of Arabidopsis Acclimation to Gene-Dosage Dependent Perturbation of Isopropylmalate DehydrogenasesProteomics & Mass SpectrometrySixue Chen, Ning Zhu
2018Comparing RNA?Seq and microarray gene expression data in two zones of the Arabidopsis root apex relevant to spaceflightAdministrationAnna-Lisa Paul
2020Hydrotropism in the primary roots of maizeProteomics & Mass SpectrometrySixue Chen
2016Root growth patterns and morphometric change based on the growth mediaAdministrationAnna-Lisa Paul
2019Cardiac MLC2 kinase is localized to the Z-disc and interacts with ?-actinin2Proteomics & Mass SpectrometrySixue Chen, Jin Koh
2018Quantitative proteomics reveals a role of JAZ7 in plant defense response to Pseudomonas syringae DC3000Proteomics & Mass SpectrometrySixue Chen
2020Root Skewing-Associated Genes Impact the Spaceflight Response of Arabidopsis thalianaAdministrationAnna-Lisa Paul
2015Dihydroxyacid dehydratase is important for gametophyte development and disruption causes increased susceptibility to salinity stress in ArabidopsisProteomics & Mass SpectrometrySixue Chen
2013Multispectral plant health imaging system for space biology and hypobaric plant growth studiesAdministrationAnna-Lisa Paul
2016Regulation of BZR1 in fruit ripening revealed by iTRAQ proteomics analysisProteomics & Mass SpectrometrySixue Chen, Ning Zhu
2019A member of the CONSTANS-like protein family is a putative regulator of reactive oxygen species homeostasis and spaceflight physiological adaptationAdministrationAnna-Lisa Paul
2018A Robust Methodology for Assessing Differential Homeolog Contributions to the Transcriptomes of AllopolyploidsProteomics & Mass Spectrometry, BioinformaticsSixue Chen, Jin Koh,
2014Flexible imaging payload for real-time fluorescent biological imaging in parabolic, suborbital and space analog environmentsAdministrationAnna-Lisa Paul
2014A comparative glycoproteome study of developing endosperm in the hexose-deficient miniature1 (mn1) seed mutant and its wild type Mn1 in maizeProteomics & Mass SpectrometrySixue Chen
2020NDVI Imaging within Space Exploration Plant Growth Modules–A Case Study from EDEN ISS AntarcticaAdministrationAnna-Lisa Paul
2019Heat-Responsive Proteomics of a Heat-Sensitive Spinach VarietyProteomics & Mass SpectrometrySixue Chen
2020Approaches for Surveying Cosmic Radiation Damage in Large Populations of Arabidopsis thaliana Seeds–Antarctic Balloons and Particle BeamsAdministration, BioinformaticsAnna-Lisa Paul
2019UBASH3A Regulates the Synthesis and Dynamics of TCR–CD3 ComplexesProteomics & Mass SpectrometrySixue Chen
2019Modelling Leaf Temperatures during Parabolic FlightsAdministrationAnna-Lisa Paul
2015Adaptive Engineering of Phytochelatin-based Heavy Metal ToleranceProteomics & Mass SpectrometrySixue Chen
2018Phenotypic characterization of an Arabidopsis T-DNA insertion line SALK_063500AdministrationAnna-Lisa Paul
2019Proteomic characterization of MPK4 signaling network and putative substratesProteomics & Mass SpectrometrySixue Chen
2018Dispersal of Human-Commensals at the Haughton Mars Project (HMP) Arctic Field-Site: Implications for the Forward Contamination Around Human Habitats on MarsAdministrationAnna-Lisa Paul
2019Metabolite signatures of grasspea suspension-cultured cells illustrate the complexity of dehydration responseProteomics & Mass SpectrometrySixue Chen
2018Plants as Part of the Deep Space Exploration SchemaAdministrationAnna-Lisa Paul
2016Proteomic Analysis Reveals the Leaf Color Regulation Mechanism in Chimera Hosta “Gold Standard” LeavesProteomics & Mass SpectrometrySixue Chen
2013Proteomic comparison of basal endosperm in maize miniature1 mutant and its wild-type Mn1Proteomics & Mass SpectrometrySixue Chen, Ning Zhu
2017Spectral Imaging within EDEN ISS for Plant Health and Productivity AssessmentAdministrationAnna-Lisa Paul
2014Identification of Regulatory Factors for Mesenchymal Stem Cell-Derived Salivary Epithelial Cells in a Co-Culture SystemProteomics & Mass SpectrometrySixue Chen, Jin Koh
2017Data for characterization of SALK_084889, a T-DNA insertion line of Arabidopsis thalianaAdministrationAnna-Lisa Paul
2018Stomata Tape-Peel: An Improved Method for Guard Cell Sample PreparationProteomics & Mass SpectrometrySixue Chen
2016Effects of Applying Hydrogen Peroxide on Phosphorus Uptake and Adhase Activity of Flooded Snap Bean RootsAdministrationAnna-Lisa Paul
2019The guard cell ionome: Understanding the role of ions in guard cell functionsProteomics & Mass SpectrometrySixue Chen
2016APEX-04 SpaceX-10AdministrationAnna-Lisa Paul
2015Differential metabolomic responses of PAMP-triggered immunity and effector-triggered immunity in Arabidopsis suspension cellsProteomics & Mass SpectrometrySixue Chen, Ning Zhu
2013Advanced Colloids Experiment (ACE) Science OverviewAdministrationAnna-Lisa Paul
2015Quantitative proteomics reveals an important role of GsCBRLK in salt stress response of soybeanProteomics & Mass SpectrometrySixue Chen, Ning Zhu, Jin Koh
2013GENE EXPRESSION IN SPACE BIOLOGYAdministrationAnna-Lisa Paul
2017Identification of MAPK Substrates Using Quantitative PhosphoproteomicsProteomics & Mass SpectrometrySixue Chen, Ning Zhu
2013Resetting the course of drug development: stem cell banking in support of drug discoveryAdministrationSteve Madore
2016Metabolomic Responses of Arabidopsis Suspension Cells to Bicarbonate under Light and Dark ConditionsProteomics & Mass SpectrometrySixue Chen
2015Distinct patterns of the histone marks associated with recruitment of the methionine chain-elongation pathway from leucine biosynthesis Proteomics & Mass SpectrometrySixue Chen
2016CUB domain-containing protein 1 and the epidermal growth factor receptor cooperate to induce cell detachmentProteomics & Mass SpectrometrySixue Chen
2019Targeted Metabolomics of Plant Hormones and Redox Metabolites in Stomatal ImmunityProteomics & Mass SpectrometrySixue Chen
2015HIV-Enhancing Factors Are Secreted by Reproductive Epithelia upon Inoculation with Bacterial Vaginosis-Associated BacteriaProteomics & Mass SpectrometrySixue Chen
2015Cytological and proteomic analyses of horsetail (Equisetum arvense L.) spore germinationProteomics & Mass SpectrometrySixue Chen
2018Characterization of thiol?based redox modifications of Brassica napusSNF1?related protein kinase 2.6?2CProteomics & Mass SpectrometrySixue Chen, Jin Koh
2018Effects of overexpression of jasmonic acid biosynthesis genes on nicotine accumulation in tobaccoProteomics & Mass SpectrometrySixue Chen
2019Molecular changes in Mesembryanthemum crystallinum guard cells underlying the C3 to CAM transitionProteomics & Mass SpectrometrySixue Chen
2020Na2CO3-responsive Photosynthetic and ROS Scavenging Mechanisms in Chloroplasts of Alkaligrass Revealed by PhosphoproteomicsProteomics & Mass SpectrometrySixue Chen
2016Editorial: Plant Single Cell Type Systems BiologyProteomics & Mass SpectrometrySixue Chen
2013Two Pdk1 phosphorylation sites on the plant cell death suppressor Adi3 contribute to substrate phosphorylationProteomics & Mass SpectrometrySixue Chen
2017Membrane Proteomics of Arabidopsis Glucosinolate Mutants cyp79B2/B3 and myb28/29Proteomics & Mass SpectrometrySixue Chen, Ning Zhu
2014Thiol-based Redox Proteins in Brassica napus Guard Cell Abscisic Acid and Methyl Jasmonate SignalingProteomics & Mass SpectrometrySixue Chen, Ning Zhu
2014Understanding Information Processes at the Proteomics LevelProteomics & Mass SpectrometrySixue Chen
2020Redox proteomics of stomatal immunity reveals role of a lipid transfer protein in plant defenseProteomics & Mass SpectrometrySixue Chen, Ning Zhu, Fanchao Zhu
2015Environment-Living Organism’s Interactions from Physiology to GenomicsProteomics & Mass SpectrometrySixue Chen
2019Carbohydrate, glutathione, and polyamine metabolism are central to Aspergillus flavus oxidative stress responses over timeProteomics & Mass SpectrometrySixue Chen
2016Plant Response to Bacterial Pathogens: A Proteomics ViewProteomics & Mass SpectrometrySixue Chen
NameTelephoneE-mailRoom

UF | ICBR Administration

Administration
Name/Title/DepartmentPhoneEmailLocationAdministration

Dr. Anna-Lisa Paul
Director, UF | ICBR

Administration

(352) 273-8029alp@ufl.edu160 CGRCAdministration

Dr. Steven Madore
Associate Director of Science, UF | ICBR
Administration

(352) 273-8038smadore@ufl.edu156 CGRCAdministration

Heather Voet
Associate Director of Administration
Administration

(352) 273-9461hvoet@ufl.edu161 CGRCAdministration



Administration

UF | ICBR Business Services

Business Services
Name/Title/DepartmentPhoneEmailLocationBusiness Services
Heather Voet
Associate Director of Administration
Business Services
(352) 273-9461hvoet@ufl.edu161 CGRCBusiness Services
Tim Hillmann
Finance Manager
Business Services
(352) 273-8027tjh4501@ufl.edu163 CGRCBusiness Services
Erica Boyd
Human Resources Generalist III
Business Services
(352) 273-8271ericalboyd@ufl.edu158 CGRCBusiness Services
Tina Hasko
Business Administrative Specialist III
Business Services
(352) 273-8048thasko@ufl.edu154 CGRCBusiness Services
Mackenzie Madore
Administrative Specialist II
Business Services
(352) 273-8065mmadore@ufl.edu157 CGRCBusiness Services
Tensi Krpan
Administrative Specialist II
Business Services
(352) 273-8026tenser9@ufl.edu181 CGRCBusiness Services

Kimberly Backer-Kelley
Core Research Facility Technician II
Administration

(352) 273-5341klbk@ufl.edu185 CGRCBusiness Services



Business Services

UF | ICBR Cyberinfrastructure

Cyberinfrastructure
Name/Title/DepartmentPhoneEmailLocationCyberinfrastructure
Ben Thebaut
IT Analyst II
Cyberinfrastructure
(352) 273-6814ben.thebaut@ufl.edu188 CGRCCyberinfrastructure
Cameron Smith
Systems Administrator/Programmer II
Cyberinfrastructure 
(352) 273-9651pc.smith@ufl.edu188 CGRCCyberinfrastructure
Manuel Luciano
Systems Administrator/Programmer II
Cyberinfrastructure 
(352) 273-8054manuel.luciano@ufl.edu188 CGRCCyberinfrastructure
Daniel Tarlini 
IT Analyst I
Cyberinfrastructure
(352) 273-8170tarlinid@ufl.edu188 CGRCCyberinfrastructure



Cyberinfrastructure

UF | ICBR Communications

Communications
Name/Title/DepartmentPhoneEmailLocationCommunications
Chris Dillon
Communications Section Director
Communications
(352) 273-8168csdillon@ufl.edu162 CGRCCommunications



Communications

UF | ICBR Bioinformatics

Email Core

Bioinformatics
Name/Title/DepartmentPhoneEmailLocationBioinformatics
Dr. Alberto Riva
Scientific Director
Bioinformatics
(352) 294-5475ariva@ufl.edu191 CGRCBioinformatics
Dr. Fahong Yu
Scientist
Bioinformatics
(352) 273-8064fyu@ufl.edu191 CGRCBioinformatics
Dr. Tongjun Gu
Assistant Scientist
Bioinformatics
(352) 273-8058tgu@ufl.edu191 CGRCBioinformatics



Bioinformatics

UF | ICBR Cytometry

Email Core

Cytometry
Name/Title/DepartmentPhoneEmailLocationCytometry
Dr. Mariza Miranda
Scientific Director
Cytometry
(352) 273-6032marizamiranda@ufl.edu292 CGRCCytometry
Doug Smith
Senior Laboratory Technician  
Cytometry
(352) 392-1745dugsmith@ufl.eduLG-164Cytometry
Alexander Linares
Core Research Facility Technician III
Cytometry
(352) 273-6032a.linares@ufl.eduCGRC 292Cytometry



Cytometry

UF | ICBR Electron Microscopy

Email Core

Electron Microscopy
Name/Title/DepartmentPhoneEmailLocationElectron Microscopy
Paul R. Chipman
Scientific Director
Electron Microscopy
(352) 294-1790pchipman@ufl.edu1012 MCSElectron Microscopy
Karen Kelley
Core Research Facility Specialist III
Electron Microscopy
(352) 273-8547vau@ufl.edu1012 MCS / 185 CGRCElectron Microscopy
Rudy Alvarado
Core Research Facility Specialist I
Electron Microscopy
(352) 846-0251ralvaradojr@ufl.edu1012 MCSElectron Microscopy
Mary Gragg
OPS Lab Technician
Electron Microscopy
(352) 846-0251mary.gragg@ufl.edu1012 MCSElectron Microscopy



Electron Microscopy

UF | ICBR Gene Expression & Genotyping

Email Core

Gene Expression & Genotyping
Name/Title/DepartmentPhoneEmailLocationGene Expression & Genotyping
Dr. Yanping Zhang
Scientific Director
Gene Expression & Genotyping
(352) 273-8043yanp@ufl.edu178F CGRCGene Expression & Genotyping
Brandon Pate
Core Research Facility Specialist II
Gene Expression & Genotyping
(352) 273-8036Bpate1@ufl.edu178 CGRCGene Expression & Genotyping
Mark Renshaw
Core Research Facility Specialist II
Gene Expression & Genotyping
(352) 273-8036marenshaw@ufl.edu178 CGRCGene Expression & Genotyping
Yasemin Can
Core Research Facility Technician III
Gene Expression & Genotyping
(352) 273-8036ycan@ufl.edu178 CGRCGene Expression & Genotyping
Sewande Mudiyanselage
Student Assistant
Gene Expression & Genotyping
(352) 273-8036s.mudiyanselage@ufl.edu178 CGRCGene Expression & Genotyping
Paul Fernandez
Student Assistant
Gene Expression & Genotyping
(352) 273-8036fernandezp@ufl.edu178 CGRCGene Expression & Genotyping
Ashlyn Lake
Student Assistant
Gene Expression & Genotyping
(352) 273-8036ashlynlake@ufl.edu178 CGRCGene Expression & Genotyping



Gene Expression & Genotyping

UF | ICBR Monoclonal Antibody

Email Core

Monoclonal Antibody
Name/Title/DepartmentPhoneEmailLocationMonoclonal Antibody
Dr. Angel Sampson
Scientific Director
Monoclonal Antibody
(352) 273-8039angel.sampson@ufl.edu175 CGRCMonoclonal Antibody
Shadi Bootorabi
Senior Biological Scientist
Monoclonal Antibody
(352) 273-8041shb@ufl.edu171A CGRCMonoclonal Antibody
Katrina Witas
Core Research Facility Technician III
Monoclonal Antibody
(352) 273-8040kaekelly@ufl.edu171 CGRCMonoclonal Antibody
Lourdes Guallpa
Student Assistant
Monoclonal Antibody
(352) 273-8040lguallpa@ufl.edu171 CGRCMonoclonal Antibody



Monoclonal Antibody

UF | ICBR NextGen DNA Sequencing

Email Core

NextGen DNA Sequencing
Name/Title/DepartmentPhoneEmailLocationNextGen DNA Sequencing
Dr. David Moraga
Scientific Director
NextGen DNA Sequencing
(352) 273-8053moraga@ufl.edu178J CGRCNextGen DNA Sequencing
Dr. Diansy Zincke
Core Research Facility Specialist III
NextGen DNA Sequencing
(352) 273-8050dzincke@ufl.edu178 CGRCNextGen DNA Sequencing
Dr. Liming Zhao
Core Research Facility Specialist II
NextGen DNA Sequencing
(352) 273-8050lmzhao@ufl.edu178 CGRCNextGen DNA Sequencing
Xiao Hui Zhou
Core Research Facility Technician III
NextGen DNA Sequencing
(352) 273-8050zxh@ufl.edu178 CGRCNextGen DNA Sequencing
Benjamin Hoffman
Core Research Facility Technician III
NextGen DNA Sequencing
(352) 273-8050semplar@ufl.edu178 CGRCNextGen DNA Sequencing
Daina Elsayed
OPS Lab Technican
NextGen DNA Sequencing
(352) 273-8050relsayed@ufl.edu178 CGRCNextGen DNA Sequencing



NextGen DNA Sequencing

UF | ICBR Proteomics & Mass Spectrometry

Email Core

Proteomics & Mass Spectrometry
Name/Title/DepartmentPhoneEmailLocationProteomics & Mass Spectrometry
Dr. Jin Koh
Scientific Director
Proteomics & Mass Spectrometry
(352) 273-8059jinkoh@ufl.edu168A CGRCProteomics & Mass Spectrometry
Ran Zheng
Core Research Facility Specialist II
Proteomics & Mass Spectrometry
(352) 273-8061ranzheng@ufl.edu169 CGRCProteomics & Mass Spectrometry
Ning Zhu
Core Research Facility Specialist II
Proteomics & Mass Spectrometry
(352) 273-8067nzhu@ufl.edu169 CGRCProteomics & Mass Spectrometry
Fanchao Zhu
Core Research Facility Specialist I
Proteomics & Mass Spectrometry
(352) 273-8060fzhu9482@ufl.edu169 CGRCProteomics & Mass Spectrometry