Gene Expression & Genotyping

Home

GENE EXPRESSION & GENOTYPING: Home | Staff & Contact | Services | Instruments | Getting Started | Sample Requirements | Core Resources

Email: ICBR-GeneExpression@ad.ufl.edu | ICBR-Genotyping@ad.ufl.edu Phone: (352) 273-8043 | (352) 273-8036

Overview

The Gene Expression & Genotyping core provides state-of-the-art technical services and consultation on Single Cell RNA-Seq, RNA-Seq, 16s metagenomics and Affymetrix gene expression arrays. High-throughput RNA-seq libraries, 16s libraries and sequencing capture libraries can be done by using the Agilent Bravo robot. QuantiGene RNA Assays measure up to 80 gene targets directly with degraded and cross-linked RNA in FFPE tissues and blood, with no RNA purification required. The BioRad QX200 AutoDG Droplet Digital PCR System provides absolute quantification of target DNA or RNA molecules with greater precision and sensitivity than qPCR, the sensitivity off ddPCR System can facilitate expanded analysis of single cells. The Genotyping services include fragment analysis using AB3730 (96 capillary technology), development of microsatellite libraries using Illumina sequence data, and genotyping using mouse tails or ear punches. These up-to-date gene expression and genotyping analysis methods allow scientists to be on the cutting edge of research.

ICBR Gene Expression & Genotyping Services

Don't see the service you are looking for? Visit ICBR NextGen DNA Sequencing for more options.

General Services

Library Construction Services

Single Cell Analysis

Genotyping Services

Project Consultation
Antibody Sequencing
Digital PCR services
Microarray Services
Sample Prep: RNA, DNA extraction
RNA DNA QC: Bioanalyzer/TapeStation, Qubit, PicoGreen
Sanger Sequencing Load only
CRISPR services
Bravo automation
QuantiGen assays (up to 80 targets): Gene Expression and CNV

16s metagenomics library Automation
Illumina Directional RNA-Seq Library Preparation (Poly A)
Illumina Non-Directional RNA-Seq Library Preparation (Poly A)
Illumina RNA-Seq library Prep for low input, ribo-depletion or degraded RNA
Illumina Small RNA libray w/Barcode
RNA-Seq library automation
rRNAs Depletion
Agilent SureSelect Target Enrichment
IDT Exome Capture Library Construction with/without Pre-pooling
Takara Single Cell Library Construction
16s library Automation Per Sample (batch w/48 samples, 96 samples)
Illumina RNA-Seq libraries (Poly A)
Illumina RNA-Seq library Prep for low input, ribo-depletion or degraded RNA
Illumina RNA-Seq library Prep (polyA with 140 samples and up, 500 samples and up)
Illumina Small RNA-Seq library w/Barcode
NEB Directional RNA-Seq Library Preparation
NEB Non-directional RNA-Seq Library preparation
NextGen Sequencing Library Quantification
RNA-Seq library automation per sample (24 samples, 48 samples, 96 samples)
rRNAs Depletion
RNA Extraction, RNA Clean-up
Agilent SureSelect Target Enrichment
IDT Exome Capture Library Construction with Pre-pooling, without Pre-pooling

10X Genomics Chromium 3’ Single Cell RNA-Seq
10X Genomics Chromium 5’ Single Cell RNA-Seq
10X Genomics Chromium Single Cell CNV analysis
10X Genomics Single Human/Mouse T cell V(D)J Library Prep (per sample)
10X Genomics Chromium Single Cell Feature Barcode for CITE-Seq
10X Genomics Chromium Single Cell Feature Barcode for CRISPR Screening

Fragment Analysis
STR Analysis
Cell Line Authentication
Copy Number Variance
SNP analysis by qPCR or digital PCR

Please note that our library construction and sequencing services do not include data analysis. Visit ICBR Bioinformatics to request Data Analysis services.

Core News

Important Year-End Dates for UF | ICBR Users

As 2020 comes to a close, ICBR’s upcoming billing schedule will be altered as follows: 12/14/2020 – Last invoices generated in 2020 12/21/2020 at noon – Deadline to submit disputes for 2020 payment. If you have expiring funds, please work with your core laboratory contact to make sure your project is completed and billed before the 12/14/2020 invoices are posted. Core-Specific Dates and Deadlines Cytometry 12/22/2020 – CY labs, both CGRC and MBI, will shut down for the holiday break and...

Excessive Heat Stroke Induces Long‐term Physiological Changes That are Linked to Altered Epigenetic Profiles

Epigenetics is the study of heritable phenotypic change that involves chemical modifications to the DNA genome sequence or associated DNA-binding proteins. These specific alterations affect how cells turn genes off or on. Exertional heat stroke (EHS) can cause long-term negative effects on health. Although epigenetic “reprogramming” of the genome is involved in the response to heat acclimation, it is not known whether the long-term effects of EHS are mediated by epigenetic reprogramming. In a st...

Lots of Samples, Little Time? Try Protein Simple Wes

Unlike traditional western blots, the Protein Simple Wes at ICBR Monoclonal Antibody runs up to 25 samples in 3 hours flat and gives you quantitative, size-based data including total protein. With a long list of applications, including cancer, SARS-CoV-2, cell & gene therapy, targeted degradation and more, there is no shortage of opportunities. The same Protein Simple Wes appeared in a recent publication featured in Nature Communications from Dr. Shinichi Someya’s research group in the Depar...

Are BPA Alternatives Safer? New Research Takes a Look

New research conducted at the University of Florida shows that a bisphenol A (BPA) alternative for making plastics, bisphenol S (BPS), could come with its own set of health risks. After past studies revealed the widely used BPA was contaminating food and water supplies, consumers quickly searched for alternatives. Market demand for BPA-free products led to the emergence of BPS as a commonly used bisphenol analog in plastic products. The UF | ICBR Proteomics and Mass Spectrometry (PM) core contri...

UPDATE: ICBR Continues to Provide Support to UF Community

With the progression of recent events, there are a lot of questions about how it affects ICBR users. Please see below, important changes that could impact your experience at ICBR. These changes will be in place for the foreseeable future. Please refer back to this page for timely updates. As always, check the UF dedicated site for campus-wide information and initiatives. LATEST NEWS ICBR is now open, Monday through Friday, to support research on the University of Florida campus. Please be...

CytoFLEX LX Available at UF | ICBR Cytometry

The CytoFLEX Flow Cytometer, the first introduction to the CytoFLEX Platform, provides the performance you need in an easy to use system allowing you to focus on the science, not the instrumentation. Its superior sensitivity and resolution throughout all configurations give it the edge over other cytometry systems four times its size. All instruments in the platform utilize CytExpert for CytoFLEX Acquisition and Analysis Software. Reach out to UF | ICBR Cytometry to experience the CytoFLEX Platf...

UF | ICBR: Shut Down for Academics for Black Lives

UF | ICBR will be closed on the afternoon of Friday, June 19th, starting at noon and ending at 5pm, to allow employees time to reflect on our personal actions and continue to educate ourselves about racism. These efforts are in conjunction with those of the President of the University of Florida and Academics for Black Lives, an initiative intended for academic faculty and staff to examine the toll of racial trauma on Black people, combat racism and hate, and seek both accountability and colle...

Dr. Anna-Lisa Paul Appointed Director of UF ICBR

The University of Florida Interdisciplinary Center for Biotechnology Research recently announced the appointment of its new director, Anna-Lisa Paul, Ph.D. Dr. Paul assumed the position effective March 20, 2020. For the past year, Dr. Paul has served as ICBR’s interim director. During that time, Dr. Paul spearheaded the center’s acquisition of state-of-the-art equipment and furthered ICBR’s collaborative relationship with UF Research departments. “The University of Florida Health Cancer Center h...