Gene Expression & Genotyping

ICBR-Genotyping@ad.ufl.edu   ///   ICBR-GeneExpression@ad.ufl.edu   ///   (352) 273-8043   ///   RRID:SCR_019145
Single Cell RNA-Seq, CRISPR Services, Digital PCR and More

CORE OVERVIEW

Welcome to UF ICBR Gene Expression and Genotyping Core (GE). Our up-to-date gene expression and genotyping analysis methods allow scientists to be on the cutting edge of research. Our high-quality data can help researchers for their grant applications and scientific paper publications.

The Gene Expression & Genotyping core provides state-of-the-art technical services and consultation on Single Cell RNA-Seq, 10x Visium Spatial Gene Expression, Covid-seq, RNA-Seq, 16s metagenomics and ThemoFisher Axiom Genotyping arrays using Beckman Biomek Liquid Handling Automation instrument. High-throughput RNA-seq libraries, 16s libraries and sequencing capture libraries can be done by using the SPT Labtech nanoliter pipetting instrument Mosquito, DragonFly and Agilent Bravo robot. QuantiGene RNA Assays measure up to 80 gene targets directly with degraded and cross-linked RNA in FFPE tissues and blood, with no RNA purification required. The BioRad QX200 AutoDG Droplet Digital PCR System provides absolute quantification of target DNA or RNA molecules with greater precision and sensitivity than qPCR, the sensitivity off ddPCR System can facilitate expanded analysis of single cells.

To help researchers at every aspect, GE also provides a variety of basic molecular biology services such as DNA isolations, PCR reactions, and PCR purifications for sequencing. High quality of DNA and RNA are the key for reliable data; therefore, DNA and RNA quality assessment services are offered using an Agilent Bioanalyzer and TapeStation instrument at GE.

The walkup service for DNA RNA extraction with QIAcube is available at GE as well, for more information, please contact us at GeneExpression@ad.ufl.edu

SERVICES OVERVIEW

General Services

Library Construction Services

Single Cell Analysis

Genotyping Services

  • Project Consultation
  • Digital PCR services
  • RNA DNA QC: Bioanalyzer/TapeStation, Qubit, PicoGreen
  • CRISPR services
  • Automated NextGen Library Preparation
  • QuantiGen assays (up to 80 targets): Gene Expression and CNV
  • 16s metagenomics library Automation
  • Illumina Directional RNA-Seq Library Preparation (Poly A)
  • Illumina Non-Directional RNA-Seq Library Preparation (Poly A)
  • Illumina RNA-Seq library Prep for low input, ribo-depletion or degraded RNA
  • Illumina Small RNA libray w/Barcode
  • RNA-Seq library automation
  • rRNAs Depletion
  • Agilent SureSelect Target Enrichment
  • IDT Exome Capture Library Construction with/without Pre-pooling
  • Takara Single Cell Library Construction
  • 16s library Automation Per Sample (batch w/48 samples, 96 samples)
  • Illumina RNA-Seq libraries (Poly A)
  • Illumina RNA-Seq library Prep for low input, ribo-depletion or degraded RNA
  • Illumina RNA-Seq library Prep (polyA with 140 samples and up, 500 samples and up)
  • Illumina Small RNA-Seq library w/Barcode
  • NEB Directional RNA-Seq Library Preparation
  • NEB Non-directional RNA-Seq Library preparation
  • NextGen Sequencing Library Quantification
  • RNA-Seq library automation per sample (24 samples, 48 samples, 96 samples)
  • rRNAs Depletion
  • RNA Extraction, RNA Clean-up
  • Agilent SureSelect Target Enrichment
  • IDT Exome Capture Library Construction with Pre-pooling, without Pre-pooling
  • 10X Genomics Chromium 3’ Single Cell RNA-Seq
  • 10X Genomics Chromium 5’ Single Cell RNA-Seq
  • 10X Genomics Chromium Single Cell CNV analysis
  • 10X Genomics Single Human/Mouse T cell V(D)J Library Prep (per sample)
  • 10X Genomics Chromium Single Cell Feature Barcode for CITE-Seq
  • 10X Genomics Chromium Single Cell Feature Barcode for CRISPR Screening
  • SNP analysis by qPCR or digital PCR
Looking for data analysis services? Visit ICBR Bioinformatics for services.
Don’t see the service you are looking for? Visit ICBR NextGen DNA Sequencing for more options.

CORE NEWS

ICBR Closed for the Thanksgiving Holiday! ICBR Closed for the Thanksgiving Holiday!
ICBR Closed for the Thanksgiving Holiday!
Wishing you and yours a joyous Thanksgiving. Best wishes from your friends at UF | ICBR! ICBR will be closed Thursday and Friday (November 28th and 29th), returning on Monday (December 2nd). We here at ICBR are thankful for you, and hope you enjoy the holiday! And a special thank you the near thousand users that came through our doors this year, including 300+ PIs from over a hundred UF departments! We look forward to working with you 2025!     Normal business hours will resume on Mond...
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Please note: Due to the Calendar Year End, the last invoices to process for 2024 will be created on Monday, December 9th.  ICBR’s upcoming billing schedule will be altered as follows: 12/9/2024 – Last invoices generated in 2024 12/16/2024 at noon – Deadline to submit disputes for 2024 payment. If you have expiring funds, please work with your core laboratory contact to make sure your project is completed and billed before the 12/9/2024 invoices are posted. ...
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ICBR Billing Schedule Update: Key Dates for Calendar Year End 2024
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ICBR Closed Friday for Veterans Day ICBR will be closed this Monday (11/11) in observation of Veterans Day   We will not be accepting packages or samples on Monday. Our normal business hours will resume on Tuesday (11/12). Enjoy the the long weekend!   Please refer to our staff directory for additional details. ...
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ICBR Closed Monday for Veterans Day
ICBR and campus closed Wednesday and Thursday due to Hurricane Milton ICBR and campus closed Wednesday and Thursday due to Hurricane Milton
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Due to Hurricane Milton, UF ICBR will be closed Wednesday, October 9th and Thursday, October 10th, and will reopen and resume normal operations at 8am on Friday. We will not be accepting packages or samples on Wednesday or Thursday. Our normal business hours will resume on Friday. Please stay safe! Additional UF Info: Due to Hurricane Milton, the University of Florida will close its offices and cancel classes, including online classes, beginning at 12:01 a.m. Wednesday, Oct. 9 and continuing th...
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ICBR and campus closed Wednesday and Thursday due to Hurricane Milton
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ICBR Hosts Successful Inaugural Research Day The University of Florida Interdisciplinary Center for Biotechnology Research (ICBR) recently held its inaugural ICBR Research Day. The 2024 event was a great success, attended by over 80 scientists representing the various colleges and departments across campus. The event began with two plenary talks followed by 4 separate sessions where 12 speakers presented their research and groundbreaking discoveries made possible by the support and expertise of ...
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UF ICBR Empowering Research Excellence and Innovation at the University of Florida The University of Florida Interdisciplinary Center for Biotechnology Research (UF ICBR) proudly continues to enable scientific discovery and innovation across the University of Florida research community. We provide access to world-class biotechnology expertise and instrumentation, essential for advancing research. UF Research announced impressive achievements in their 2023 Annual Report, including $1.096 billion ...
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Turning Up the Heat on Tumors – ICBR Supports Landmark Study in Novel Cancer Vaccine Strategy The ICBR Cytometry and Electron Microscopy Shared Resources played an integral part in supporting a landmark study from UF cancer researchers published in the May 1 issue of the prestigious journal Cell.  The study, led by physician scientist Dr. Elias Sayour, a UF Health pediatric oncologist and co-leader of the UF Health Cancer Center’s Immuno-Oncology and Microbiome research program, represents...
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ICBR Billing Schedule Update: Key Dates for Fiscal Year End 2024
Due to the Fiscal Year End, the last invoices to process for FY2024 will be created on Monday, June 10th Due to Fiscal Year End, ICBR’s upcoming billing schedule will be altered as follows: 06/10/2024 – Last invoices generated in fiscal year 2024 06/17/2024 at noon – Deadline to submit disputes for FY2024 payment. 07/01/2024 – Invoices will begin to be created for FY2025 If you have expiring funds, please work with your core laboratory contact to make sure your project is completed and billed ...
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ICBR Billing Schedule Update: Key Dates for Fiscal Year End 2024

CORE INSTRUMENTS

Gene Expression & Genotyping